| TF name | Position | PWM scan score |
| ArcA | 108-168 | 33.808 |
| OxyR | 98-142 | 27.335 |
| CysB | 118-159 | 25.765 |
| Mlc | 129-151 | 24.995 |
| NagC | 132-154 | 21.484 |
| DcuR | 115-169 | 20.717 |
| PhoB | 358-377 | 19.363 |
| GadE | 132-151 | 18.784 |
| CytR | 358-397 | 18.621 |
| OmpR | 368-387 | 18.314 |
| FNR | 130-151 | 18.011 |
| GcvA | 22-50 | 16.733 |
| PhoP | 103-119 | 16.332 |
| Fis | 102-122 | 16.289 |
| MetR | 118-141 | 15.697 |
| DeoR | 377-392 | 15.652 |
| RcsB | 223-236 | 15.628 |
| ArgR | 108-123 | 15.174 |
| Rob | 75-95 | 14.786 |
| Fur | 158-172 | 14.657 |
| H-NS | 143-157 | 14.124 |
| UlaR | 326-345 | 14.085 |
| Nac | 224-238 | 13.894 |
| MarA | 185-205 | 13.886 |
| IHF | 139-151 | 13.498 |
| GlpR | 129-148 | 13.308 |
| GntR | 11-30 | 12.864 |
| TyrR | 377-398 | 12.820 |
| UxuR | 117-134 | 12.687 |
| SoxS | 187-204 | 12.076 |
| AgaR | 224-247 | 11.980 |
| MelR | 289-306 | 11.973 |
| ArgP | 150-162 | 11.860 |
| CRP | 368-389 | 11.767 |
| CpxR | 328-342 | 11.664 |
| NorR | 132-148 | 11.370 |
| XylR | 216-233 | 11.139 |
| ModE | 164-190 | 10.864 |
| LacI | 45-65 | 10.847 |
| Lrp | 225-236 | 10.703 |
| FruR | 1-18 | 10.044 |
| MetJ | 371-378 | 9.765 |
| FadR | 199-215 | 9.641 |
| AraC | 217-234 | 9.608 |
| PspF | 164-180 | 9.520 |
| Ada | 289-316 | 9.400 |
| DnaA | 104-112 | 9.331 |
| NarL | 150-156 | 9.240 |
| TorR | 101-110 | 8.656 |
| FhlA | 329-368 | 8.524 |
| GalS | 153-168 | 8.363 |
| GalR | 153-168 | 8.363 |
| TrpR | 338-355 | 8.213 |
| NarP | 112-118 | 7.762 |
| PurR | 41-56 | 7.549 |
| IdnR | 374-389 | 6.635 |
| RhaS | 169-185 | 6.227 |
| LexA | 47-66 | 5.858 |