| TF name | Position | PWM scan score |
| ArcA | 86-146 | 20.523 |
| GcvA | 340-368 | 18.488 |
| Mlc | 324-346 | 18.045 |
| MarA | 102-122 | 17.363 |
| NagC | 326-348 | 14.055 |
| CRP | 332-353 | 13.407 |
| NorR | 265-281 | 13.334 |
| H-NS | 107-121 | 13.161 |
| Fur | 340-354 | 13.122 |
| IHF | 340-352 | 12.859 |
| FNR | 110-131 | 12.343 |
| PhoB | 96-115 | 12.058 |
| SoxS | 104-121 | 11.875 |
| Nac | 220-234 | 11.794 |
| GlpR | 109-128 | 11.535 |
| MetR | 23-46 | 11.534 |
| Lrp | 343-354 | 11.118 |
| Rob | 101-121 | 11.032 |
| XylR | 342-359 | 10.967 |
| UlaR | 167-186 | 10.945 |
| RcsB | 341-354 | 10.941 |
| GadE | 112-131 | 10.852 |
| OmpR | 332-351 | 10.696 |
| AgaR | 240-263 | 10.413 |
| RhaS | 55-71 | 10.359 |
| IdnR | 30-45 | 10.214 |
| AraC | 234-251 | 9.652 |
| CpxR | 43-57 | 9.443 |
| CytR | 118-157 | 9.241 |
| Fis | 110-130 | 9.192 |
| UxuR | 63-80 | 9.128 |
| CysB | 90-131 | 9.030 |
| ArgR | 339-354 | 8.931 |
| Ada | 22-49 | 8.178 |
| OxyR | 138-182 | 8.091 |
| NarL | 105-111 | 8.086 |
| TorR | 142-151 | 8.078 |
| DeoR | 105-120 | 7.679 |
| PhoP | 115-131 | 7.297 |
| FruR | 263-280 | 7.236 |
| ArgP | 342-354 | 7.041 |
| NarP | 110-116 | 6.860 |
| NtrC | 101-117 | 6.500 |
| TyrR | 341-362 | 6.279 |
| FadR | 339-355 | 6.039 |
| MetJ | 197-204 | 6.028 |
| PurR | 33-48 | 5.340 |
| GntR | 289-308 | 5.239 |
| MelR | 18-35 | 5.222 |
| DnaA | 88-96 | 5.214 |
| CueR | 326-344 | 5.184 |
| LacI | 266-286 | 5.166 |