| TF name | Position | PWM scan score |
| ArcA | 287-347 | 17.350 |
| Nac | 132-146 | 16.295 |
| Fur | 134-148 | 16.045 |
| MetR | 321-344 | 15.166 |
| FNR | 78-99 | 14.929 |
| GcvA | 240-268 | 14.797 |
| SoxS | 1-18 | 14.445 |
| OmpR | 79-98 | 14.128 |
| RcsB | 137-150 | 14.078 |
| IHF | 136-148 | 13.854 |
| CysB | 140-181 | 13.810 |
| NorR | 139-155 | 13.334 |
| UlaR | 131-150 | 13.151 |
| PhoB | 130-149 | 13.099 |
| UxuR | 81-98 | 12.761 |
| LexA | 196-215 | 12.397 |
| DeoR | 48-63 | 12.329 |
| DnaA | 252-260 | 11.932 |
| IdnR | 315-330 | 11.550 |
| CRP | 23-44 | 11.355 |
| Lrp | 133-144 | 11.318 |
| ModE | 195-221 | 11.301 |
| TyrR | 194-215 | 11.142 |
| Fis | 338-358 | 11.080 |
| ArgP | 135-147 | 10.665 |
| AraC | 326-343 | 10.630 |
| OxyR | 51-95 | 10.597 |
| GlpR | 13-32 | 10.444 |
| PhoP | 130-146 | 10.369 |
| NagC | 335-357 | 10.365 |
| XylR | 330-347 | 9.943 |
| PspF | 121-137 | 9.644 |
| AgaR | 120-143 | 9.596 |
| H-NS | 335-349 | 9.537 |
| Rob | 296-316 | 9.465 |
| TorR | 247-256 | 9.424 |
| MelR | 155-172 | 9.074 |
| FadR | 12-28 | 8.838 |
| MarA | 242-262 | 8.796 |
| NarL | 83-89 | 8.681 |
| Mlc | 184-206 | 8.391 |
| MetJ | 161-168 | 8.225 |
| ArgR | 239-254 | 8.094 |
| NarP | 200-206 | 7.762 |
| NtrC | 128-144 | 7.504 |
| GalS | 318-333 | 7.352 |
| GalR | 318-333 | 7.352 |
| Ada | 75-102 | 7.305 |
| CpxR | 373-387 | 7.297 |
| CytR | 263-302 | 7.235 |
| FhlA | 105-144 | 6.948 |
| RhaS | 62-78 | 6.895 |
| LacI | 103-123 | 6.848 |
| GadE | 252-271 | 6.550 |
| MalT | 54-63 | 6.329 |
| TrpR | 96-113 | 5.813 |
| GntR | 245-264 | 5.011 |