| TF name | Position | PWM scan score |
| ArcA | 236-296 | 21.959 |
| OmpR | 269-288 | 16.604 |
| OxyR | 245-289 | 15.760 |
| PhoP | 243-259 | 14.852 |
| Fur | 11-25 | 14.271 |
| RcsB | 98-111 | 12.899 |
| MelR | 258-275 | 12.721 |
| Fis | 271-291 | 12.632 |
| CRP | 127-148 | 12.332 |
| GntR | 17-36 | 12.133 |
| UlaR | 239-258 | 12.034 |
| MarA | 46-66 | 11.763 |
| NagC | 41-63 | 11.733 |
| NorR | 204-220 | 11.729 |
| ArgR | 349-364 | 11.693 |
| CysB | 116-157 | 11.620 |
| XylR | 243-260 | 11.567 |
| IHF | 244-256 | 11.556 |
| GadE | 237-256 | 11.527 |
| CytR | 248-287 | 11.078 |
| Nac | 270-284 | 10.718 |
| SoxS | 92-109 | 10.537 |
| DnaA | 40-48 | 10.127 |
| H-NS | 133-147 | 10.106 |
| CueR | 89-107 | 10.096 |
| PhoB | 9-28 | 10.076 |
| AraC | 308-325 | 10.057 |
| Lrp | 188-199 | 9.998 |
| MetJ | 134-141 | 9.765 |
| PspF | 121-137 | 9.389 |
| GalR | 51-66 | 9.386 |
| GalS | 51-66 | 9.386 |
| FNR | 347-368 | 9.316 |
| NarL | 57-63 | 9.129 |
| CpxR | 244-258 | 8.690 |
| UxuR | 271-288 | 8.675 |
| Mlc | 264-286 | 8.628 |
| Rob | 53-73 | 8.457 |
| ModE | 134-160 | 8.424 |
| TorR | 274-283 | 7.973 |
| MetR | 183-206 | 7.952 |
| ArgP | 277-289 | 7.554 |
| TyrR | 12-33 | 7.281 |
| GcvA | 255-283 | 7.069 |
| DeoR | 299-314 | 6.646 |
| FadR | 193-209 | 6.644 |
| GlpR | 133-152 | 6.391 |
| MalT | 89-98 | 6.370 |
| PurR | 289-304 | 5.963 |
| AgaR | 9-32 | 5.837 |
| NtrC | 8-24 | 5.696 |
| FruR | 290-307 | 5.649 |
| NarP | 326-332 | 5.407 |
| Ada | 280-307 | 5.405 |
| LexA | 212-231 | 5.336 |
| IdnR | 48-63 | 5.191 |