| TF name | Position | PWM scan score |
| ArcA | 301-361 | 26.132 |
| CysB | 316-357 | 16.965 |
| UxuR | 207-224 | 16.716 |
| CytR | 128-167 | 16.669 |
| Ada | 295-322 | 16.374 |
| PhoP | 332-348 | 14.741 |
| FNR | 231-252 | 14.644 |
| SoxS | 322-339 | 14.490 |
| OmpR | 338-357 | 14.261 |
| MetR | 286-309 | 14.174 |
| Fur | 124-138 | 13.323 |
| AgaR | 125-148 | 13.322 |
| Fis | 357-377 | 13.235 |
| NorR | 275-291 | 13.072 |
| GadE | 314-333 | 12.910 |
| DcuR | 318-372 | 12.847 |
| TyrR | 289-310 | 12.658 |
| RcsB | 295-308 | 12.507 |
| XylR | 126-143 | 12.381 |
| Rob | 211-231 | 11.795 |
| OxyR | 110-154 | 11.628 |
| GcvA | 333-361 | 11.560 |
| LexA | 135-154 | 11.545 |
| IHF | 127-139 | 11.528 |
| NagC | 46-68 | 11.501 |
| CpxR | 359-373 | 11.269 |
| CRP | 289-310 | 11.239 |
| Nac | 293-307 | 11.154 |
| H-NS | 29-43 | 11.091 |
| Lrp | 129-140 | 10.990 |
| ArgR | 32-47 | 10.953 |
| DnaA | 143-151 | 10.881 |
| UlaR | 304-323 | 10.487 |
| CueR | 23-41 | 10.442 |
| MalT | 189-198 | 9.815 |
| PspF | 315-331 | 9.614 |
| NarL | 129-135 | 9.580 |
| AraC | 49-66 | 9.316 |
| DeoR | 128-143 | 9.234 |
| IdnR | 50-65 | 9.049 |
| ModE | 327-353 | 8.726 |
| GlpR | 134-153 | 8.708 |
| PhoB | 2-21 | 8.238 |
| TrpR | 317-334 | 8.078 |
| TorR | 127-136 | 7.963 |
| FruR | 348-365 | 7.924 |
| ArgP | 13-25 | 7.492 |
| PurR | 323-338 | 7.467 |
| NarP | 55-61 | 7.423 |
| FhlA | 308-347 | 7.369 |
| MarA | 336-356 | 7.356 |
| Mlc | 186-208 | 7.101 |
| GalR | 323-338 | 6.738 |
| GalS | 323-338 | 6.738 |
| LacI | 42-62 | 6.556 |
| GntR | 152-171 | 6.454 |
| MetJ | 333-340 | 5.992 |