| TF name | Position | PWM scan score |
| ArcA | 37-97 | 36.587 |
| OxyR | 30-74 | 29.801 |
| CysB | 37-78 | 29.381 |
| GcvA | 55-83 | 24.245 |
| NagC | 47-69 | 21.688 |
| CytR | 14-53 | 20.172 |
| AgaR | 35-58 | 19.540 |
| OmpR | 46-65 | 19.539 |
| FNR | 7-28 | 18.088 |
| GadE | 51-70 | 17.740 |
| CRP | 44-65 | 16.808 |
| Mlc | 45-67 | 16.416 |
| H-NS | 229-243 | 15.997 |
| GntR | 44-63 | 15.651 |
| PhoB | 3-22 | 15.406 |
| Fis | 351-371 | 15.345 |
| ArgP | 357-369 | 15.331 |
| DcuR | 201-255 | 15.140 |
| CpxR | 226-240 | 14.211 |
| SoxS | 47-64 | 14.206 |
| Fur | 291-305 | 14.184 |
| TyrR | 11-32 | 14.035 |
| MarA | 240-260 | 14.019 |
| IHF | 56-68 | 13.199 |
| PhoP | 224-240 | 13.190 |
| PspF | 176-192 | 12.928 |
| ArgR | 40-55 | 12.714 |
| TorR | 353-362 | 12.673 |
| AraC | 53-70 | 12.612 |
| ModE | 82-108 | 12.370 |
| Nac | 219-233 | 11.914 |
| XylR | 178-195 | 11.912 |
| Rob | 58-78 | 11.831 |
| MelR | 238-255 | 11.824 |
| DeoR | 372-387 | 11.759 |
| UlaR | 52-71 | 11.578 |
| MetR | 50-73 | 11.549 |
| FruR | 302-319 | 11.487 |
| NorR | 296-312 | 11.192 |
| UxuR | 177-194 | 11.089 |
| TrpR | 175-192 | 10.911 |
| Lrp | 42-53 | 10.897 |
| IdnR | 39-54 | 10.748 |
| GlpR | 46-65 | 10.299 |
| NarL | 39-45 | 10.241 |
| Ada | 24-51 | 9.847 |
| RcsB | 59-72 | 9.674 |
| LexA | 181-200 | 8.496 |
| GalR | 250-265 | 7.666 |
| GalS | 250-265 | 7.666 |
| LacI | 189-209 | 7.355 |
| FadR | 344-360 | 7.075 |
| FhlA | 44-83 | 6.389 |
| CueR | 223-241 | 6.057 |
| RhaS | 99-115 | 6.056 |
| DnaA | 204-212 | 5.517 |
| MalT | 122-131 | 5.303 |
| MetJ | 83-90 | 5.086 |
| NarP | 40-46 | 5.080 |
| NtrC | 24-40 | 5.017 |