| TF name | Position | PWM scan score |
| ArcA | 338-398 | 35.813 |
| OxyR | 343-387 | 29.801 |
| CysB | 350-391 | 29.381 |
| GcvA | 368-396 | 24.245 |
| NagC | 360-382 | 21.688 |
| CytR | 327-366 | 20.172 |
| AgaR | 348-371 | 19.540 |
| OmpR | 359-378 | 19.539 |
| FNR | 320-341 | 18.088 |
| GadE | 364-383 | 17.740 |
| XylR | 177-194 | 17.472 |
| H-NS | 284-298 | 17.388 |
| CRP | 357-378 | 16.808 |
| Mlc | 358-380 | 16.416 |
| GntR | 357-376 | 15.651 |
| PhoB | 316-335 | 15.406 |
| Rob | 17-37 | 15.054 |
| Fis | 363-383 | 14.296 |
| SoxS | 360-377 | 14.206 |
| TyrR | 324-345 | 14.035 |
| ArgR | 282-297 | 13.549 |
| FruR | 312-329 | 13.469 |
| IHF | 369-381 | 13.199 |
| DeoR | 270-285 | 13.129 |
| CpxR | 326-340 | 12.943 |
| ArgP | 289-301 | 12.798 |
| AraC | 366-383 | 12.612 |
| ModE | 309-335 | 12.574 |
| TorR | 323-332 | 12.278 |
| PhoP | 367-383 | 12.132 |
| UlaR | 365-384 | 11.578 |
| MetR | 363-386 | 11.549 |
| UxuR | 290-307 | 11.428 |
| Nac | 343-357 | 11.243 |
| DcuR | 93-147 | 11.093 |
| Lrp | 355-366 | 10.897 |
| IdnR | 352-367 | 10.748 |
| GlpR | 359-378 | 10.299 |
| NarL | 352-358 | 10.241 |
| LexA | 259-278 | 10.177 |
| FadR | 29-45 | 9.949 |
| Ada | 337-364 | 9.847 |
| MarA | 11-31 | 9.824 |
| RcsB | 372-385 | 9.674 |
| LacI | 182-202 | 9.430 |
| Fur | 285-299 | 9.228 |
| NorR | 319-335 | 8.892 |
| PspF | 84-100 | 8.835 |
| MelR | 339-356 | 8.686 |
| MetJ | 36-43 | 7.729 |
| PurR | 132-147 | 7.379 |
| FhlA | 357-396 | 6.389 |
| DnaA | 292-300 | 6.291 |
| NtrC | 310-326 | 5.702 |
| RhaS | 54-70 | 5.524 |
| GalR | 286-301 | 5.337 |
| GalS | 286-301 | 5.337 |
| NarP | 353-359 | 5.080 |