| TF name | Position | PWM scan score |
| ArcA | 15-75 | 26.715 |
| FNR | 6-27 | 20.908 |
| MelR | 276-293 | 20.541 |
| OmpR | 36-55 | 19.731 |
| CysB | 42-83 | 18.419 |
| DcuR | 31-85 | 17.896 |
| NagC | 54-76 | 17.375 |
| AgaR | 306-329 | 17.245 |
| Ada | 32-59 | 15.763 |
| PhoB | 4-23 | 15.402 |
| IHF | 304-316 | 14.840 |
| CRP | 38-59 | 14.353 |
| GcvA | 156-184 | 14.237 |
| GlpR | 5-24 | 13.972 |
| IdnR | 310-325 | 13.622 |
| CytR | 33-72 | 13.526 |
| UxuR | 309-326 | 13.325 |
| UlaR | 12-31 | 12.996 |
| ModE | 41-67 | 12.942 |
| XylR | 150-167 | 12.389 |
| DeoR | 58-73 | 11.962 |
| Fur | 15-29 | 11.897 |
| MetJ | 265-272 | 11.615 |
| DnaA | 43-51 | 11.578 |
| MetR | 189-212 | 10.597 |
| Fis | 317-337 | 10.040 |
| RcsB | 310-323 | 9.973 |
| PspF | 38-54 | 9.819 |
| NorR | 303-319 | 9.765 |
| TorR | 312-321 | 9.722 |
| OxyR | 320-364 | 9.683 |
| GalS | 16-31 | 9.620 |
| GalR | 16-31 | 9.620 |
| Lrp | 52-63 | 9.494 |
| ArgR | 195-210 | 9.194 |
| GadE | 162-181 | 9.134 |
| ArgP | 242-254 | 9.070 |
| GntR | 365-384 | 9.011 |
| TyrR | 12-33 | 8.850 |
| NarP | 374-380 | 8.660 |
| H-NS | 53-67 | 8.655 |
| NarL | 27-33 | 8.545 |
| Rob | 379-399 | 8.539 |
| CpxR | 323-337 | 8.210 |
| Nac | 315-329 | 8.077 |
| PhoP | 368-384 | 8.070 |
| PurR | 16-31 | 8.058 |
| Mlc | 54-76 | 7.976 |
| FruR | 320-337 | 7.927 |
| MalT | 339-348 | 7.741 |
| MarA | 114-134 | 7.634 |
| FhlA | 289-328 | 7.463 |
| SoxS | 374-391 | 7.377 |
| LacI | 357-377 | 6.677 |
| AraC | 309-326 | 6.101 |
| TrpR | 322-339 | 5.919 |
| FadR | 1-17 | 5.725 |