| TF name | Position | PWM scan score |
| ArcA | 306-366 | 32.962 |
| NagC | 236-258 | 22.756 |
| OxyR | 286-330 | 22.756 |
| CysB | 326-367 | 21.205 |
| FhlA | 297-336 | 20.482 |
| AgaR | 284-307 | 20.390 |
| OmpR | 301-320 | 19.334 |
| UlaR | 375-394 | 19.101 |
| CytR | 215-254 | 18.075 |
| IHF | 229-241 | 17.022 |
| CRP | 249-270 | 15.231 |
| DcuR | 219-273 | 15.157 |
| GadE | 346-365 | 15.096 |
| DeoR | 309-324 | 14.987 |
| MelR | 365-382 | 14.976 |
| PspF | 42-58 | 14.815 |
| FNR | 252-273 | 14.739 |
| AraC | 243-260 | 14.496 |
| Mlc | 293-315 | 14.178 |
| Fis | 304-324 | 14.165 |
| GcvA | 316-344 | 14.142 |
| H-NS | 320-334 | 13.770 |
| PhoB | 274-293 | 13.753 |
| Fur | 39-53 | 13.574 |
| Nac | 162-176 | 13.202 |
| Ada | 239-266 | 12.996 |
| TyrR | 297-318 | 12.907 |
| XylR | 256-273 | 12.543 |
| UxuR | 62-79 | 12.509 |
| GlpR | 305-324 | 12.473 |
| MetR | 28-51 | 12.424 |
| RcsB | 151-164 | 12.045 |
| FadR | 25-41 | 10.688 |
| PhoP | 308-324 | 10.665 |
| IdnR | 247-262 | 10.570 |
| TorR | 257-266 | 10.477 |
| MarA | 315-335 | 10.318 |
| Rob | 318-338 | 10.034 |
| NorR | 244-260 | 9.765 |
| TrpR | 223-240 | 9.570 |
| Lrp | 160-171 | 9.534 |
| MetJ | 182-189 | 9.382 |
| ArgR | 318-333 | 9.363 |
| ArgP | 383-395 | 9.096 |
| NarL | 345-351 | 9.087 |
| NarP | 225-231 | 8.594 |
| SoxS | 306-323 | 8.403 |
| FruR | 327-344 | 8.247 |
| DnaA | 156-164 | 8.092 |
| CpxR | 230-244 | 8.023 |
| ModE | 309-335 | 7.922 |
| RhaS | 326-342 | 7.628 |
| PurR | 243-258 | 7.355 |
| LexA | 338-357 | 7.208 |
| GntR | 329-348 | 5.649 |
| CueR | 193-211 | 5.627 |
| LacI | 150-170 | 5.398 |