| TF name | Position | PWM scan score |
| CysB | 193-234 | 24.337 |
| DcuR | 193-247 | 21.788 |
| ArcA | 325-385 | 21.505 |
| AraC | 263-280 | 20.898 |
| UlaR | 37-56 | 19.101 |
| CytR | 34-73 | 17.774 |
| IdnR | 111-126 | 17.530 |
| AgaR | 299-322 | 16.105 |
| OmpR | 5-24 | 15.950 |
| CRP | 317-338 | 15.857 |
| PhoB | 290-309 | 15.116 |
| GadE | 8-27 | 15.096 |
| MelR | 27-44 | 14.976 |
| RcsB | 269-282 | 14.207 |
| DeoR | 40-55 | 14.197 |
| PhoP | 261-277 | 14.130 |
| TyrR | 98-119 | 13.975 |
| Fis | 356-376 | 13.905 |
| ModE | 137-163 | 13.861 |
| UxuR | 352-369 | 13.842 |
| H-NS | 4-18 | 13.479 |
| NorR | 324-340 | 12.706 |
| FNR | 197-218 | 12.554 |
| NagC | 212-234 | 12.391 |
| Ada | 131-158 | 11.868 |
| GcvA | 29-57 | 11.714 |
| ArgR | 166-181 | 11.624 |
| Lrp | 64-75 | 11.582 |
| PspF | 298-314 | 11.511 |
| Nac | 327-341 | 11.340 |
| GalR | 175-190 | 11.007 |
| GalS | 175-190 | 11.007 |
| NtrC | 130-146 | 10.861 |
| SoxS | 322-339 | 10.789 |
| OxyR | 302-346 | 10.645 |
| XylR | 231-248 | 10.418 |
| IHF | 262-274 | 10.399 |
| TorR | 107-116 | 10.350 |
| GntR | 235-254 | 10.324 |
| LexA | 154-173 | 10.242 |
| GlpR | 215-234 | 10.006 |
| Fur | 58-72 | 9.994 |
| CpxR | 148-162 | 9.894 |
| PurR | 175-190 | 9.544 |
| DnaA | 366-374 | 9.246 |
| ArgP | 63-75 | 9.125 |
| NarL | 7-13 | 9.087 |
| FhlA | 256-295 | 8.747 |
| NarP | 298-304 | 8.594 |
| MetR | 257-280 | 8.304 |
| Mlc | 210-232 | 8.138 |
| CaiF | 109-153 | 7.976 |
| RhaS | 329-345 | 7.605 |
| Rob | 322-342 | 7.605 |
| MarA | 12-32 | 6.871 |
| FadR | 219-235 | 6.163 |
| TrpR | 35-52 | 5.428 |
| MetJ | 263-270 | 5.324 |
| LacI | 105-125 | 5.307 |
| MalT | 58-67 | 5.031 |