| TF name | Position | PWM scan score |
| ArcA | 281-341 | 25.208 |
| OmpR | 376-395 | 19.434 |
| CytR | 354-393 | 17.579 |
| H-NS | 107-121 | 16.272 |
| AgaR | 95-118 | 15.839 |
| CysB | 284-325 | 15.278 |
| ModE | 370-396 | 15.117 |
| OxyR | 203-247 | 14.878 |
| LexA | 69-88 | 14.323 |
| CRP | 372-393 | 14.032 |
| XylR | 101-118 | 13.976 |
| TyrR | 359-380 | 13.830 |
| Mlc | 282-304 | 13.730 |
| PhoP | 380-396 | 13.717 |
| NorR | 69-85 | 13.250 |
| UlaR | 283-302 | 13.055 |
| PspF | 67-83 | 12.938 |
| Fis | 287-307 | 12.920 |
| PhoB | 98-117 | 12.814 |
| FNR | 103-124 | 12.560 |
| UxuR | 298-315 | 12.086 |
| NagC | 366-388 | 11.835 |
| GadE | 112-131 | 11.826 |
| Nac | 377-391 | 11.761 |
| ArgR | 312-327 | 11.723 |
| SoxS | 61-78 | 11.722 |
| IHF | 103-115 | 11.564 |
| CpxR | 105-119 | 11.351 |
| Rob | 103-123 | 11.203 |
| DnaA | 300-308 | 11.178 |
| ArgP | 107-119 | 10.853 |
| Lrp | 378-389 | 10.837 |
| GlpR | 108-127 | 10.163 |
| TorR | 16-25 | 10.028 |
| RcsB | 247-260 | 9.785 |
| DeoR | 314-329 | 9.663 |
| DcuR | 334-388 | 9.432 |
| AraC | 373-390 | 9.183 |
| PurR | 347-362 | 9.017 |
| GcvA | 273-301 | 8.718 |
| Fur | 285-299 | 8.481 |
| NarP | 393-399 | 8.372 |
| Ada | 337-364 | 8.101 |
| MarA | 107-127 | 7.826 |
| NarL | 190-196 | 7.791 |
| FadR | 66-82 | 7.055 |
| IdnR | 238-253 | 6.833 |
| GalS | 9-24 | 6.821 |
| GalR | 9-24 | 6.821 |
| MelR | 201-218 | 6.361 |
| GntR | 31-50 | 6.087 |
| MalT | 236-245 | 5.625 |
| LacI | 325-345 | 5.287 |
| MetR | 365-388 | 5.285 |
| RhaS | 262-278 | 5.138 |