| TF name | Position | PWM scan score |
| ArcA | 211-271 | 21.908 |
| CytR | 328-367 | 16.611 |
| OxyR | 195-239 | 16.201 |
| GcvA | 232-260 | 14.744 |
| Fur | 229-243 | 14.371 |
| GntR | 17-36 | 13.974 |
| MarA | 319-339 | 13.792 |
| Fis | 197-217 | 13.316 |
| H-NS | 235-249 | 12.973 |
| Nac | 288-302 | 12.778 |
| ModE | 136-162 | 12.641 |
| RcsB | 233-246 | 12.494 |
| OmpR | 233-252 | 12.425 |
| GalR | 102-117 | 12.142 |
| GalS | 102-117 | 12.142 |
| FNR | 20-41 | 11.854 |
| IHF | 247-259 | 11.820 |
| SoxS | 199-216 | 11.807 |
| AraC | 197-214 | 11.535 |
| UlaR | 227-246 | 11.494 |
| CRP | 218-239 | 11.484 |
| PurR | 72-87 | 11.094 |
| CysB | 314-355 | 10.958 |
| Lrp | 233-244 | 10.324 |
| AgaR | 227-250 | 10.078 |
| PhoB | 9-28 | 9.789 |
| CaiF | 211-255 | 9.669 |
| PhoP | 331-347 | 9.507 |
| IdnR | 69-84 | 9.492 |
| Rob | 233-253 | 9.458 |
| NarL | 342-348 | 9.129 |
| TorR | 238-247 | 8.828 |
| GlpR | 220-239 | 8.759 |
| CpxR | 34-48 | 8.649 |
| DnaA | 274-282 | 8.632 |
| RhaS | 101-117 | 8.557 |
| ArgP | 96-108 | 8.534 |
| Ada | 104-131 | 8.346 |
| PspF | 340-356 | 8.214 |
| ArgR | 199-214 | 7.994 |
| DeoR | 207-222 | 7.838 |
| XylR | 34-51 | 7.798 |
| TyrR | 199-220 | 7.795 |
| UxuR | 205-222 | 7.768 |
| MelR | 98-115 | 7.732 |
| GadE | 237-256 | 7.693 |
| MalT | 257-266 | 7.257 |
| NagC | 215-237 | 6.962 |
| NarP | 365-371 | 6.860 |
| MetR | 238-261 | 6.692 |
| NorR | 252-268 | 6.535 |
| DcuR | 198-252 | 6.317 |
| MetJ | 131-138 | 5.786 |
| NtrC | 338-354 | 5.419 |
| FadR | 294-310 | 5.329 |
| LacI | 77-97 | 5.082 |