| TF name | Position | PWM scan score |
| ArcA | 2-62 | 24.312 |
| Mlc | 97-119 | 23.558 |
| CysB | 265-306 | 20.850 |
| OxyR | 259-303 | 19.915 |
| OmpR | 183-202 | 18.737 |
| MetR | 183-206 | 17.280 |
| DcuR | 230-284 | 17.064 |
| NagC | 292-314 | 16.881 |
| GadE | 294-313 | 16.569 |
| CytR | 8-47 | 15.574 |
| H-NS | 192-206 | 15.491 |
| FhlA | 288-327 | 15.287 |
| GntR | 177-196 | 15.079 |
| GcvA | 26-54 | 14.918 |
| Fis | 185-205 | 13.941 |
| IHF | 298-310 | 13.647 |
| PhoB | 193-212 | 13.581 |
| MetJ | 257-264 | 13.538 |
| AraC | 355-372 | 13.518 |
| ArgR | 299-314 | 13.410 |
| MarA | 187-207 | 12.868 |
| UlaR | 368-387 | 12.777 |
| FNR | 10-31 | 12.590 |
| XylR | 275-292 | 12.551 |
| ModE | 228-254 | 12.478 |
| AgaR | 320-343 | 12.475 |
| Nac | 290-304 | 12.424 |
| IdnR | 171-186 | 12.363 |
| PspF | 273-289 | 12.206 |
| PhoP | 297-313 | 12.033 |
| TyrR | 222-243 | 11.978 |
| SoxS | 179-196 | 11.754 |
| DeoR | 190-205 | 11.688 |
| ArgP | 108-120 | 11.574 |
| Rob | 346-366 | 11.343 |
| CRP | 179-200 | 10.879 |
| CpxR | 190-204 | 10.860 |
| RcsB | 359-372 | 10.303 |
| Lrp | 250-261 | 9.865 |
| FruR | 261-278 | 9.634 |
| NarL | 187-193 | 9.482 |
| NarP | 116-122 | 9.455 |
| LacI | 202-222 | 9.262 |
| NorR | 4-20 | 9.137 |
| GlpR | 73-92 | 8.953 |
| Fur | 68-82 | 8.943 |
| TorR | 294-303 | 8.943 |
| UxuR | 185-202 | 8.675 |
| PurR | 233-248 | 8.513 |
| MelR | 84-101 | 8.498 |
| LexA | 240-259 | 8.345 |
| FadR | 152-168 | 8.324 |
| CueR | 163-181 | 8.313 |
| DnaA | 353-361 | 8.238 |
| Ada | 310-337 | 8.168 |
| GalS | 181-196 | 5.029 |
| GalR | 181-196 | 5.029 |