| TF name | Position | PWM scan score |
| ArcA | 62-122 | 28.677 |
| OxyR | 339-383 | 24.963 |
| CysB | 80-121 | 24.912 |
| FNR | 344-365 | 19.147 |
| GcvA | 317-345 | 17.940 |
| ModE | 293-319 | 17.937 |
| OmpR | 83-102 | 17.514 |
| NagC | 329-351 | 17.505 |
| Fur | 353-367 | 16.326 |
| CytR | 61-100 | 15.927 |
| DcuR | 164-218 | 15.794 |
| Rob | 82-102 | 15.638 |
| GadE | 27-46 | 15.637 |
| IHF | 353-365 | 15.319 |
| H-NS | 362-376 | 15.150 |
| Mlc | 78-100 | 15.102 |
| AgaR | 355-378 | 14.903 |
| CRP | 341-362 | 14.884 |
| PhoP | 314-330 | 14.400 |
| XylR | 230-247 | 14.279 |
| RcsB | 360-373 | 14.197 |
| ArgR | 316-331 | 13.889 |
| TyrR | 71-92 | 13.696 |
| Nac | 361-375 | 13.329 |
| PhoB | 85-104 | 12.949 |
| CpxR | 62-76 | 12.613 |
| MetR | 330-353 | 12.261 |
| Lrp | 359-370 | 12.153 |
| Fis | 293-313 | 12.082 |
| UxuR | 276-293 | 11.881 |
| UlaR | 174-193 | 11.848 |
| GntR | 19-38 | 11.419 |
| AraC | 91-108 | 10.852 |
| MelR | 319-336 | 10.705 |
| NorR | 352-368 | 9.943 |
| DeoR | 81-96 | 9.510 |
| Ada | 177-204 | 9.326 |
| NtrC | 335-351 | 9.253 |
| TorR | 365-374 | 8.828 |
| FhlA | 324-363 | 8.817 |
| ArgP | 86-98 | 8.711 |
| SoxS | 102-119 | 8.466 |
| GlpR | 305-324 | 8.100 |
| FadR | 2-18 | 8.075 |
| NarL | 288-294 | 7.907 |
| PspF | 84-100 | 7.865 |
| NarP | 353-359 | 7.740 |
| DnaA | 159-167 | 7.738 |
| MalT | 183-192 | 7.129 |
| IdnR | 378-393 | 6.806 |
| CueR | 99-117 | 6.762 |
| MarA | 285-305 | 6.702 |
| LacI | 293-313 | 6.546 |
| PurR | 288-303 | 6.368 |
| TrpR | 129-146 | 6.185 |
| RhaS | 16-32 | 5.960 |
| GalR | 288-303 | 5.801 |
| GalS | 288-303 | 5.801 |
| MetJ | 13-20 | 5.548 |