| TF name | Position | PWM scan score |
| ArcA | 275-335 | 27.105 |
| PhoB | 330-349 | 21.688 |
| OmpR | 299-318 | 19.698 |
| Fis | 303-323 | 18.785 |
| DcuR | 299-353 | 18.031 |
| FNR | 303-324 | 16.809 |
| Mlc | 195-217 | 16.211 |
| ModE | 317-343 | 15.784 |
| AgaR | 309-332 | 14.461 |
| MarA | 301-321 | 14.327 |
| GcvA | 314-342 | 13.399 |
| H-NS | 299-313 | 13.398 |
| DeoR | 238-253 | 13.373 |
| OxyR | 342-386 | 13.219 |
| GadE | 141-160 | 13.160 |
| CytR | 257-296 | 12.876 |
| CysB | 12-53 | 12.754 |
| CRP | 300-321 | 12.741 |
| UxuR | 231-248 | 12.697 |
| RcsB | 65-78 | 12.564 |
| XylR | 227-244 | 12.545 |
| ArgR | 295-310 | 12.501 |
| LacI | 274-294 | 12.361 |
| IHF | 317-329 | 12.329 |
| UlaR | 209-228 | 12.137 |
| Lrp | 10-21 | 11.887 |
| NagC | 237-259 | 11.575 |
| Fur | 45-59 | 11.513 |
| PspF | 252-268 | 11.417 |
| Ada | 48-75 | 11.297 |
| PhoP | 355-371 | 11.180 |
| MetR | 40-63 | 10.924 |
| GntR | 194-213 | 10.859 |
| ArgP | 43-55 | 10.729 |
| MelR | 252-269 | 10.708 |
| Nac | 60-74 | 10.395 |
| CpxR | 31-45 | 10.196 |
| IdnR | 202-217 | 10.120 |
| TorR | 198-207 | 9.701 |
| FadR | 315-331 | 9.636 |
| SoxS | 36-53 | 9.459 |
| NarL | 191-197 | 8.685 |
| TyrR | 268-289 | 8.343 |
| GlpR | 302-321 | 8.220 |
| AraC | 190-207 | 8.205 |
| DnaA | 244-252 | 7.643 |
| FruR | 313-330 | 7.578 |
| Rob | 362-382 | 7.526 |
| MetJ | 151-158 | 7.497 |
| NorR | 114-130 | 7.079 |
| NarP | 365-371 | 6.879 |
| NtrC | 307-323 | 6.850 |
| MalT | 25-34 | 6.167 |
| FhlA | 70-109 | 6.058 |
| GalR | 86-101 | 5.722 |
| GalS | 86-101 | 5.722 |
| LexA | 197-216 | 5.305 |