| TF name | Position | PWM scan score |
| ArcA | 331-391 | 29.922 |
| Mlc | 361-383 | 20.999 |
| AgaR | 349-372 | 20.649 |
| CysB | 332-373 | 20.052 |
| OxyR | 335-379 | 16.826 |
| H-NS | 136-150 | 16.197 |
| CRP | 359-380 | 16.187 |
| CytR | 224-263 | 16.078 |
| CpxR | 268-282 | 15.706 |
| DeoR | 305-320 | 15.252 |
| TyrR | 91-112 | 15.106 |
| PhoP | 336-352 | 14.638 |
| GcvA | 333-361 | 14.632 |
| DcuR | 264-318 | 14.364 |
| Nac | 358-372 | 14.275 |
| NagC | 360-382 | 13.989 |
| PspF | 246-262 | 13.754 |
| OmpR | 359-378 | 13.668 |
| IHF | 351-363 | 13.597 |
| GlpR | 138-157 | 13.561 |
| Fis | 359-379 | 13.355 |
| UlaR | 347-366 | 13.228 |
| GadE | 136-155 | 12.748 |
| Rob | 354-374 | 12.497 |
| ArgP | 330-342 | 12.382 |
| FNR | 97-118 | 12.264 |
| ArgR | 365-380 | 11.995 |
| Ada | 338-365 | 11.667 |
| UxuR | 247-264 | 11.539 |
| RcsB | 173-186 | 11.420 |
| ModE | 345-371 | 11.310 |
| NorR | 8-24 | 11.262 |
| Lrp | 277-288 | 11.161 |
| MetR | 330-353 | 10.773 |
| PhoB | 349-368 | 10.694 |
| NarL | 303-309 | 10.130 |
| IdnR | 86-101 | 10.026 |
| NarP | 51-57 | 9.680 |
| TorR | 100-109 | 9.517 |
| DnaA | 140-148 | 8.866 |
| AraC | 25-42 | 8.729 |
| SoxS | 267-284 | 8.242 |
| FadR | 349-365 | 8.218 |
| MarA | 274-294 | 8.117 |
| MetJ | 103-110 | 7.802 |
| GntR | 103-122 | 7.758 |
| MelR | 2-19 | 7.738 |
| LexA | 328-347 | 7.369 |
| XylR | 365-382 | 7.057 |
| FhlA | 242-281 | 6.655 |
| MalT | 133-142 | 6.346 |
| NtrC | 325-341 | 6.335 |
| RhaS | 302-318 | 6.024 |
| LacI | 65-85 | 5.861 |
| Fur | 267-281 | 5.133 |