| TF name | Position | PWM scan score |
| GntR | 373-392 | 13.293 |
| Lrp | 253-264 | 12.819 |
| GlpR | 225-244 | 12.473 |
| Fis | 46-66 | 12.095 |
| ArcA | 26-86 | 11.645 |
| MarA | 244-264 | 11.564 |
| AgaR | 122-145 | 11.126 |
| PhoP | 57-73 | 10.994 |
| Nac | 378-392 | 10.982 |
| PspF | 328-344 | 10.779 |
| SoxS | 22-39 | 10.570 |
| Ada | 204-231 | 10.531 |
| MetR | 77-100 | 10.527 |
| PhoB | 52-71 | 10.442 |
| ArgP | 344-356 | 10.335 |
| AraC | 118-135 | 10.316 |
| UlaR | 367-386 | 10.266 |
| FNR | 179-200 | 10.064 |
| NtrC | 325-341 | 9.995 |
| Mlc | 369-391 | 9.867 |
| NarL | 330-336 | 9.580 |
| H-NS | 70-84 | 9.513 |
| OmpR | 52-71 | 9.274 |
| DnaA | 258-266 | 9.246 |
| GadE | 59-78 | 9.231 |
| DeoR | 136-151 | 9.158 |
| GcvA | 288-316 | 9.135 |
| RcsB | 25-38 | 8.837 |
| IHF | 370-382 | 8.833 |
| IdnR | 45-60 | 8.515 |
| CytR | 21-60 | 8.456 |
| CRP | 245-266 | 8.230 |
| MalT | 98-107 | 8.162 |
| XylR | 338-355 | 7.802 |
| FruR | 28-45 | 7.798 |
| TorR | 285-294 | 7.643 |
| CpxR | 69-83 | 7.422 |
| RhaS | 81-97 | 7.265 |
| UxuR | 317-334 | 7.221 |
| MelR | 167-184 | 7.156 |
| ArgR | 383-398 | 6.674 |
| MetJ | 345-352 | 6.590 |
| TyrR | 25-46 | 6.185 |
| CueR | 47-65 | 5.812 |
| NorR | 318-334 | 5.746 |
| CysB | 32-73 | 5.684 |
| GalR | 110-125 | 5.562 |
| GalS | 110-125 | 5.562 |
| Fur | 286-300 | 5.394 |
| NarP | 367-373 | 5.293 |