| TF name | Position | PWM scan score |
| ArcA | 328-388 | 30.270 |
| PhoP | 256-272 | 19.810 |
| CysB | 342-383 | 19.279 |
| Fur | 186-200 | 18.586 |
| GlpR | 355-374 | 18.323 |
| FadR | 299-315 | 17.192 |
| FNR | 12-33 | 16.508 |
| H-NS | 353-367 | 16.389 |
| OmpR | 211-230 | 16.365 |
| CRP | 355-376 | 15.988 |
| MarA | 250-270 | 15.488 |
| IHF | 21-33 | 15.240 |
| Fis | 335-355 | 15.215 |
| NagC | 357-379 | 14.721 |
| OxyR | 175-219 | 14.418 |
| ArgR | 341-356 | 13.753 |
| FruR | 61-78 | 13.183 |
| PhoB | 212-231 | 13.151 |
| SoxS | 332-349 | 12.997 |
| AgaR | 353-376 | 12.417 |
| Mlc | 347-369 | 12.414 |
| GadE | 260-279 | 12.273 |
| CpxR | 61-75 | 12.030 |
| DeoR | 81-96 | 11.949 |
| RcsB | 258-271 | 11.927 |
| CytR | 319-358 | 11.872 |
| MetJ | 150-157 | 11.820 |
| Nac | 158-172 | 11.663 |
| NtrC | 331-347 | 11.577 |
| ModE | 217-243 | 11.350 |
| PspF | 342-358 | 11.162 |
| Rob | 269-289 | 11.020 |
| UxuR | 215-232 | 10.723 |
| MetR | 212-235 | 10.706 |
| GcvA | 345-373 | 10.093 |
| Lrp | 342-353 | 9.877 |
| TyrR | 220-241 | 9.714 |
| DnaA | 323-331 | 9.252 |
| NarL | 344-350 | 9.240 |
| AraC | 150-167 | 9.229 |
| CueR | 276-294 | 9.179 |
| IdnR | 151-166 | 9.143 |
| DcuR | 235-289 | 8.992 |
| NarP | 325-331 | 8.911 |
| GalS | 206-221 | 8.878 |
| GalR | 206-221 | 8.878 |
| ArgP | 365-377 | 8.862 |
| LacI | 304-324 | 8.829 |
| UlaR | 213-232 | 8.806 |
| NorR | 348-364 | 8.721 |
| PurR | 21-36 | 8.434 |
| Ada | 331-358 | 8.346 |
| GntR | 225-244 | 8.267 |
| TorR | 348-357 | 8.217 |
| MelR | 122-139 | 7.885 |
| XylR | 182-199 | 7.558 |
| FhlA | 36-75 | 7.517 |
| RhaS | 196-212 | 5.361 |