| TF name | Position | PWM scan score |
| ArcA | 313-373 | 35.588 |
| GcvA | 283-311 | 19.023 |
| NagC | 287-309 | 18.544 |
| OmpR | 157-176 | 18.422 |
| FNR | 312-333 | 18.265 |
| TyrR | 259-280 | 17.982 |
| AgaR | 299-322 | 17.177 |
| GadE | 290-309 | 17.001 |
| DcuR | 330-384 | 16.809 |
| ModE | 252-278 | 16.582 |
| CRP | 309-330 | 15.988 |
| Fis | 260-280 | 15.855 |
| CytR | 155-194 | 15.745 |
| CysB | 26-67 | 15.576 |
| H-NS | 168-182 | 15.542 |
| UlaR | 255-274 | 15.249 |
| IHF | 347-359 | 14.789 |
| OxyR | 338-382 | 13.293 |
| Nac | 251-265 | 12.955 |
| CpxR | 282-296 | 12.782 |
| RcsB | 313-326 | 12.568 |
| MarA | 285-305 | 12.271 |
| PspF | 127-143 | 12.149 |
| Lrp | 315-326 | 11.851 |
| Rob | 101-121 | 11.671 |
| PhoP | 162-178 | 11.481 |
| PhoB | 170-189 | 11.477 |
| GntR | 321-340 | 11.336 |
| GlpR | 162-181 | 11.293 |
| FhlA | 283-322 | 11.161 |
| Ada | 175-202 | 10.827 |
| LacI | 156-176 | 10.508 |
| TorR | 25-34 | 10.468 |
| ArgP | 296-308 | 10.240 |
| SoxS | 351-368 | 10.225 |
| ArgR | 165-180 | 9.998 |
| XylR | 346-363 | 9.943 |
| Mlc | 285-307 | 9.758 |
| NarL | 105-111 | 9.580 |
| DnaA | 328-336 | 9.252 |
| Fur | 344-358 | 9.154 |
| NarP | 330-336 | 8.911 |
| MetR | 342-365 | 8.860 |
| FadR | 175-191 | 8.747 |
| NorR | 180-196 | 8.704 |
| IdnR | 358-373 | 8.411 |
| UxuR | 344-361 | 8.151 |
| PurR | 261-276 | 7.573 |
| DeoR | 288-303 | 7.311 |
| FruR | 256-273 | 6.927 |
| AraC | 203-220 | 6.905 |
| LexA | 66-85 | 6.603 |
| MetJ | 74-81 | 6.561 |
| TrpR | 257-274 | 5.514 |
| RhaS | 131-147 | 5.265 |