| TF name | Position | PWM scan score |
| ArcA | 212-272 | 36.671 |
| CysB | 333-374 | 23.103 |
| OmpR | 337-356 | 22.726 |
| DcuR | 302-356 | 22.161 |
| OxyR | 311-355 | 21.300 |
| CytR | 347-386 | 20.248 |
| PhoP | 341-357 | 19.779 |
| FNR | 215-236 | 19.610 |
| NagC | 297-319 | 19.181 |
| AgaR | 277-300 | 18.371 |
| GcvA | 333-361 | 17.231 |
| GadE | 347-366 | 16.955 |
| CpxR | 256-270 | 16.561 |
| Fur | 209-223 | 16.545 |
| CRP | 3-24 | 16.460 |
| TyrR | 289-310 | 16.205 |
| Rob | 9-29 | 15.224 |
| Fis | 378-398 | 15.164 |
| SoxS | 60-77 | 15.157 |
| MetR | 103-126 | 14.967 |
| Mlc | 330-352 | 14.774 |
| H-NS | 336-350 | 14.360 |
| PhoB | 369-388 | 14.005 |
| IHF | 343-355 | 13.610 |
| FhlA | 294-333 | 13.431 |
| Nac | 277-291 | 13.398 |
| AraC | 41-58 | 13.244 |
| ArgR | 61-76 | 13.094 |
| UlaR | 191-210 | 12.788 |
| PspF | 40-56 | 12.582 |
| Lrp | 340-351 | 12.138 |
| MarA | 85-105 | 12.106 |
| RcsB | 346-359 | 11.984 |
| DeoR | 274-289 | 11.722 |
| ArgP | 253-265 | 11.357 |
| Ada | 212-239 | 11.022 |
| DnaA | 13-21 | 10.872 |
| MelR | 239-256 | 10.812 |
| XylR | 63-80 | 10.226 |
| IdnR | 322-337 | 10.214 |
| GntR | 314-333 | 10.079 |
| NorR | 189-205 | 9.943 |
| GlpR | 231-250 | 9.610 |
| NarL | 13-19 | 9.580 |
| GalS | 210-225 | 9.575 |
| GalR | 210-225 | 9.575 |
| MetJ | 375-382 | 9.382 |
| PurR | 82-97 | 8.802 |
| TorR | 339-348 | 8.601 |
| CaiF | 254-298 | 8.468 |
| ModE | 337-363 | 8.171 |
| UxuR | 339-356 | 8.037 |
| NarP | 285-291 | 7.740 |
| LacI | 171-191 | 7.073 |
| FadR | 22-38 | 6.113 |
| MalT | 41-50 | 6.055 |
| LexA | 7-26 | 5.996 |
| TrpR | 269-286 | 5.701 |