| TF name | Position | PWM scan score |
| ArcA | 146-206 | 26.947 |
| OmpR | 266-285 | 21.049 |
| OxyR | 137-181 | 19.177 |
| CysB | 253-294 | 18.436 |
| NagC | 162-184 | 18.068 |
| PhoP | 223-239 | 17.463 |
| ArgR | 263-278 | 17.213 |
| AgaR | 372-395 | 16.991 |
| IHF | 374-386 | 16.495 |
| CytR | 268-307 | 16.351 |
| H-NS | 270-284 | 16.261 |
| FNR | 270-291 | 16.198 |
| Rob | 277-297 | 15.795 |
| Nac | 184-198 | 15.793 |
| GadE | 361-380 | 15.482 |
| MarA | 350-370 | 15.478 |
| SoxS | 38-55 | 14.858 |
| MelR | 332-349 | 14.854 |
| Fis | 119-139 | 14.451 |
| PurR | 14-29 | 14.186 |
| CRP | 25-46 | 13.827 |
| RcsB | 278-291 | 13.259 |
| PhoB | 182-201 | 13.254 |
| Ada | 288-315 | 13.194 |
| UlaR | 301-320 | 13.170 |
| GcvA | 276-304 | 12.994 |
| UxuR | 367-384 | 12.697 |
| Mlc | 342-364 | 12.420 |
| DcuR | 332-386 | 12.065 |
| GntR | 23-42 | 11.558 |
| AraC | 374-391 | 11.558 |
| FhlA | 242-281 | 11.353 |
| ArgP | 299-311 | 11.220 |
| Fur | 176-190 | 10.687 |
| FruR | 169-186 | 10.554 |
| DeoR | 29-44 | 10.478 |
| XylR | 348-365 | 10.403 |
| NarL | 282-288 | 10.241 |
| Lrp | 122-133 | 10.180 |
| TyrR | 264-285 | 10.041 |
| MetR | 255-278 | 9.899 |
| TorR | 185-194 | 9.785 |
| PspF | 84-100 | 9.278 |
| GlpR | 259-278 | 9.136 |
| DnaA | 49-57 | 9.060 |
| ModE | 270-296 | 8.279 |
| LacI | 19-39 | 7.701 |
| MetJ | 216-223 | 7.497 |
| CpxR | 309-323 | 7.164 |
| FadR | 361-377 | 6.932 |
| NorR | 315-331 | 6.918 |
| NarP | 162-168 | 6.657 |
| IdnR | 18-33 | 6.457 |
| GalS | 14-29 | 6.022 |
| GalR | 14-29 | 6.022 |
| NtrC | 112-128 | 5.848 |