| TF name | Position | PWM scan score |
| ArcA | 81-141 | 30.694 |
| GcvA | 90-118 | 20.200 |
| CysB | 82-123 | 19.299 |
| CRP | 109-130 | 18.244 |
| OmpR | 75-94 | 18.115 |
| NagC | 79-101 | 17.983 |
| Mlc | 99-121 | 17.931 |
| MarA | 286-306 | 17.498 |
| GadE | 96-115 | 17.123 |
| MetR | 125-148 | 17.063 |
| H-NS | 139-153 | 16.714 |
| FNR | 94-115 | 16.264 |
| Fis | 274-294 | 16.247 |
| CytR | 97-136 | 15.943 |
| OxyR | 101-145 | 15.289 |
| IHF | 93-105 | 14.115 |
| GlpR | 78-97 | 13.913 |
| Rob | 106-126 | 13.642 |
| ModE | 124-150 | 13.386 |
| UlaR | 55-74 | 13.011 |
| ArgP | 374-386 | 12.723 |
| NorR | 96-112 | 12.545 |
| XylR | 216-233 | 12.296 |
| PspF | 219-235 | 12.166 |
| ArgR | 249-264 | 12.158 |
| TyrR | 91-112 | 11.911 |
| Fur | 112-126 | 11.881 |
| PhoB | 376-395 | 11.466 |
| PhoP | 268-284 | 11.431 |
| CpxR | 133-147 | 11.214 |
| DcuR | 60-114 | 10.913 |
| GntR | 98-117 | 10.743 |
| AgaR | 3-26 | 10.660 |
| Lrp | 143-154 | 10.408 |
| SoxS | 87-104 | 10.401 |
| NarL | 95-101 | 10.377 |
| DeoR | 277-292 | 10.223 |
| Nac | 110-124 | 10.221 |
| IdnR | 212-227 | 10.026 |
| NarP | 330-336 | 9.746 |
| MelR | 284-301 | 9.318 |
| RcsB | 296-309 | 9.286 |
| PurR | 72-87 | 8.514 |
| UxuR | 274-291 | 8.433 |
| DnaA | 143-151 | 8.160 |
| NtrC | 106-122 | 7.838 |
| RhaS | 101-117 | 7.753 |
| FadR | 125-141 | 7.452 |
| AraC | 265-282 | 7.415 |
| TorR | 298-307 | 7.337 |
| LacI | 63-83 | 7.278 |
| LexA | 140-159 | 6.644 |
| FruR | 85-102 | 6.543 |
| Ada | 124-151 | 6.379 |
| MetJ | 19-26 | 5.992 |
| MalT | 4-13 | 5.806 |
| GalR | 72-87 | 5.521 |
| GalS | 72-87 | 5.521 |