| TF name | Position | PWM scan score |
| ArcA | 216-276 | 22.585 |
| NagC | 10-32 | 20.321 |
| CysB | 315-356 | 17.907 |
| FNR | 7-28 | 15.077 |
| GadE | 7-26 | 15.070 |
| CytR | 219-258 | 15.048 |
| Fis | 211-231 | 13.940 |
| CRP | 45-66 | 13.513 |
| Fur | 222-236 | 13.340 |
| OmpR | 214-233 | 13.164 |
| AraC | 315-332 | 12.960 |
| RcsB | 319-332 | 12.948 |
| Mlc | 8-30 | 12.947 |
| PhoB | 53-72 | 12.915 |
| Ada | 216-243 | 12.627 |
| PhoP | 215-231 | 12.422 |
| GlpR | 133-152 | 12.404 |
| H-NS | 149-163 | 12.173 |
| Lrp | 252-263 | 11.887 |
| OxyR | 211-255 | 11.698 |
| XylR | 5-22 | 11.263 |
| MelR | 54-71 | 11.138 |
| UlaR | 225-244 | 11.109 |
| IHF | 249-261 | 11.100 |
| IdnR | 325-340 | 10.214 |
| TyrR | 336-357 | 10.177 |
| DeoR | 49-64 | 10.096 |
| AgaR | 232-255 | 10.081 |
| SoxS | 151-168 | 10.063 |
| ModE | 306-332 | 10.053 |
| NorR | 284-300 | 9.879 |
| Rob | 318-338 | 9.800 |
| MetJ | 315-322 | 9.765 |
| FhlA | 125-164 | 9.469 |
| MetR | 343-366 | 8.828 |
| TorR | 131-140 | 8.796 |
| MarA | 46-66 | 8.577 |
| NarL | 268-274 | 8.545 |
| LacI | 143-163 | 8.527 |
| Nac | 141-155 | 7.824 |
| ArgR | 152-167 | 7.781 |
| DcuR | 247-301 | 7.646 |
| MalT | 90-99 | 7.574 |
| ArgP | 8-20 | 7.481 |
| CpxR | 4-18 | 7.339 |
| GcvA | 317-345 | 6.752 |
| UxuR | 291-308 | 6.620 |
| GntR | 315-334 | 6.297 |
| PspF | 311-327 | 6.223 |
| FadR | 153-169 | 6.203 |
| GalS | 58-73 | 5.553 |
| GalR | 58-73 | 5.553 |
| RhaS | 309-325 | 5.483 |
| DnaA | 267-275 | 5.426 |
| NtrC | 231-247 | 5.290 |