| TF name | Position | PWM scan score |
| ArcA | 68-128 | 24.455 |
| OxyR | 66-110 | 21.256 |
| CysB | 81-122 | 19.231 |
| Rob | 287-307 | 16.241 |
| DcuR | 66-120 | 16.107 |
| GlpR | 328-347 | 16.060 |
| CytR | 62-101 | 15.959 |
| FNR | 92-113 | 15.668 |
| SoxS | 56-73 | 13.264 |
| XylR | 88-105 | 13.164 |
| Fur | 347-361 | 12.809 |
| OmpR | 92-111 | 12.727 |
| GadE | 6-25 | 12.422 |
| CaiF | 286-330 | 12.280 |
| DeoR | 160-175 | 12.055 |
| Fis | 109-129 | 11.742 |
| AgaR | 72-95 | 11.641 |
| ArgR | 64-79 | 11.590 |
| TyrR | 176-197 | 11.229 |
| GcvA | 101-129 | 11.202 |
| Ada | 309-336 | 11.136 |
| ArgP | 345-357 | 10.769 |
| H-NS | 291-305 | 10.728 |
| AraC | 71-88 | 10.674 |
| PhoB | 289-308 | 10.586 |
| CpxR | 215-229 | 10.542 |
| IHF | 80-92 | 10.527 |
| Lrp | 344-355 | 10.479 |
| Nac | 105-119 | 10.261 |
| PhoP | 65-81 | 10.136 |
| NagC | 98-120 | 10.076 |
| CueR | 321-339 | 9.935 |
| CRP | 77-98 | 9.809 |
| GntR | 321-340 | 9.601 |
| FadR | 68-84 | 9.391 |
| RcsB | 288-301 | 9.381 |
| MarA | 46-66 | 9.352 |
| UlaR | 68-87 | 9.239 |
| ModE | 267-293 | 9.209 |
| NarL | 161-167 | 8.928 |
| DnaA | 295-303 | 8.866 |
| Mlc | 98-120 | 8.852 |
| MetR | 5-28 | 8.828 |
| NorR | 377-393 | 8.254 |
| MetJ | 229-236 | 8.201 |
| PurR | 113-128 | 8.071 |
| MelR | 17-34 | 8.069 |
| FhlA | 51-90 | 7.639 |
| TorR | 98-107 | 7.571 |
| GalS | 285-300 | 7.426 |
| GalR | 285-300 | 7.426 |
| UxuR | 160-177 | 6.882 |
| LexA | 367-386 | 6.497 |
| MalT | 321-330 | 6.474 |
| FruR | 132-149 | 6.208 |
| NarP | 218-224 | 5.342 |
| RhaS | 112-128 | 5.314 |