| TF name | Position | PWM scan score |
| ArcA | 236-296 | 17.957 |
| FNR | 240-261 | 16.456 |
| CRP | 259-280 | 15.843 |
| CysB | 232-273 | 15.369 |
| NagC | 260-282 | 15.195 |
| Lrp | 40-51 | 13.183 |
| ArgR | 1-16 | 12.968 |
| ArgP | 276-288 | 12.798 |
| AgaR | 11-34 | 12.675 |
| MelR | 32-49 | 12.598 |
| UlaR | 348-367 | 12.279 |
| Ada | 105-132 | 11.874 |
| H-NS | 39-53 | 11.694 |
| IHF | 273-285 | 10.857 |
| PhoB | 31-50 | 10.849 |
| Fis | 118-138 | 10.745 |
| Mlc | 258-280 | 10.431 |
| MetJ | 235-242 | 10.363 |
| Nac | 41-55 | 10.215 |
| GadE | 24-43 | 10.069 |
| OxyR | 239-283 | 10.018 |
| DcuR | 230-284 | 9.825 |
| MarA | 265-285 | 9.647 |
| RcsB | 40-53 | 9.634 |
| GntR | 151-170 | 9.599 |
| AraC | 336-353 | 9.571 |
| IdnR | 25-40 | 9.304 |
| DeoR | 158-173 | 9.272 |
| FadR | 273-289 | 9.014 |
| CytR | 237-276 | 8.942 |
| XylR | 356-373 | 8.887 |
| TyrR | 31-52 | 8.821 |
| PhoP | 271-287 | 8.820 |
| OmpR | 265-284 | 8.589 |
| SoxS | 267-284 | 8.568 |
| FruR | 16-33 | 8.459 |
| PspF | 28-44 | 8.459 |
| Rob | 265-285 | 8.068 |
| UxuR | 129-146 | 7.859 |
| FhlA | 198-237 | 7.832 |
| DnaA | 341-349 | 7.738 |
| GcvA | 275-303 | 7.633 |
| NarL | 301-307 | 7.438 |
| ModE | 28-54 | 7.412 |
| CpxR | 254-268 | 7.043 |
| NorR | 123-139 | 6.740 |
| GalS | 197-212 | 5.755 |
| GalR | 197-212 | 5.755 |
| TorR | 42-51 | 5.629 |
| MalT | 223-232 | 5.338 |
| TrpR | 265-282 | 5.314 |
| MetR | 247-270 | 5.308 |
| LacI | 261-281 | 5.297 |
| GlpR | 251-270 | 5.045 |