| TF name | Position | PWM scan score |
| ArcA | 269-329 | 26.180 |
| GadE | 313-332 | 17.594 |
| FNR | 309-330 | 17.400 |
| PhoP | 320-336 | 16.497 |
| IHF | 302-314 | 16.225 |
| CysB | 286-327 | 16.189 |
| NagC | 312-334 | 16.101 |
| AgaR | 294-317 | 15.977 |
| GcvA | 307-335 | 15.324 |
| OmpR | 310-329 | 15.154 |
| Mlc | 307-329 | 14.874 |
| PhoB | 158-177 | 14.845 |
| CytR | 300-339 | 14.609 |
| H-NS | 313-327 | 14.028 |
| RcsB | 371-384 | 13.515 |
| Fis | 315-335 | 12.897 |
| Lrp | 373-384 | 12.806 |
| MarA | 85-105 | 12.737 |
| UxuR | 205-222 | 12.697 |
| Rob | 374-394 | 12.335 |
| GntR | 310-329 | 12.183 |
| DeoR | 169-184 | 11.977 |
| Nac | 314-328 | 11.843 |
| CRP | 306-327 | 11.757 |
| ArgP | 375-387 | 11.371 |
| ArgR | 352-367 | 11.200 |
| CpxR | 302-316 | 11.146 |
| Ada | 283-310 | 11.099 |
| IdnR | 158-173 | 10.120 |
| TyrR | 306-327 | 9.981 |
| Fur | 194-208 | 9.958 |
| SoxS | 238-255 | 9.878 |
| TorR | 298-307 | 9.754 |
| AraC | 299-316 | 9.722 |
| NarL | 167-173 | 9.580 |
| UlaR | 284-303 | 9.456 |
| XylR | 309-326 | 9.382 |
| DnaA | 317-325 | 9.246 |
| MelR | 209-226 | 9.126 |
| MetR | 149-172 | 8.923 |
| GlpR | 158-177 | 8.441 |
| CueR | 184-202 | 8.125 |
| FhlA | 309-348 | 7.959 |
| NorR | 161-177 | 7.801 |
| FruR | 178-195 | 7.724 |
| MetJ | 367-374 | 7.386 |
| ModE | 299-325 | 7.382 |
| MalT | 280-289 | 7.332 |
| NarP | 254-260 | 6.512 |
| DcuR | 285-339 | 6.303 |
| LexA | 350-369 | 6.202 |
| GalS | 10-25 | 6.182 |
| GalR | 10-25 | 6.182 |
| FadR | 323-339 | 6.042 |
| OxyR | 335-379 | 6.019 |
| PspF | 357-373 | 5.632 |
| LacI | 370-390 | 5.559 |