| TF name | Position | PWM scan score |
| ArcA | 56-116 | 31.055 |
| CysB | 76-117 | 20.584 |
| TyrR | 87-108 | 19.702 |
| CytR | 41-80 | 19.571 |
| NagC | 107-129 | 18.814 |
| OmpR | 317-336 | 17.866 |
| GcvA | 46-74 | 16.938 |
| H-NS | 104-118 | 16.915 |
| RcsB | 315-328 | 15.968 |
| Fis | 63-83 | 15.124 |
| FruR | 142-159 | 14.722 |
| Rob | 89-109 | 14.711 |
| Fur | 225-239 | 14.593 |
| FNR | 321-342 | 14.581 |
| MarA | 76-96 | 14.319 |
| CRP | 96-117 | 14.310 |
| OxyR | 54-98 | 14.263 |
| AgaR | 96-119 | 14.116 |
| Lrp | 317-328 | 12.952 |
| PspF | 59-75 | 12.861 |
| UlaR | 278-297 | 12.598 |
| NtrC | 264-280 | 12.570 |
| IHF | 89-101 | 12.524 |
| LacI | 325-345 | 12.398 |
| DcuR | 302-356 | 12.034 |
| Mlc | 88-110 | 11.876 |
| PhoB | 104-123 | 11.833 |
| FadR | 281-297 | 11.651 |
| NorR | 230-246 | 11.645 |
| MelR | 315-332 | 11.502 |
| SoxS | 46-63 | 11.295 |
| Nac | 137-151 | 11.146 |
| PhoP | 184-200 | 11.077 |
| ArgP | 319-331 | 10.488 |
| MetJ | 186-193 | 10.363 |
| GadE | 326-345 | 10.181 |
| ArgR | 85-100 | 10.153 |
| MetR | 273-296 | 10.136 |
| DnaA | 322-330 | 10.007 |
| UxuR | 18-35 | 9.907 |
| CpxR | 89-103 | 9.814 |
| TorR | 71-80 | 9.785 |
| FhlA | 34-73 | 9.764 |
| GlpR | 106-125 | 9.586 |
| ModE | 39-65 | 9.532 |
| LexA | 217-236 | 9.187 |
| Ada | 68-95 | 9.001 |
| NarL | 294-300 | 8.681 |
| DeoR | 159-174 | 8.582 |
| XylR | 88-105 | 8.215 |
| CaiF | 25-69 | 7.693 |
| GntR | 290-309 | 7.546 |
| AraC | 219-236 | 7.504 |
| NarP | 393-399 | 7.400 |
| IdnR | 139-154 | 6.823 |
| RhaS | 258-274 | 6.117 |
| GalR | 133-148 | 5.655 |
| GalS | 133-148 | 5.655 |
| PurR | 141-156 | 5.424 |