| TF name | Position | PWM scan score |
| ArcA | 72-132 | 29.343 |
| CysB | 269-310 | 26.057 |
| OmpR | 367-386 | 21.904 |
| Rob | 84-104 | 19.901 |
| FNR | 84-105 | 18.801 |
| GadE | 330-349 | 16.453 |
| AgaR | 269-292 | 15.312 |
| Fis | 364-384 | 15.028 |
| NagC | 262-284 | 15.007 |
| H-NS | 330-344 | 14.998 |
| PhoP | 327-343 | 14.753 |
| GntR | 85-104 | 14.743 |
| DcuR | 250-304 | 14.647 |
| PspF | 192-208 | 14.274 |
| IHF | 93-105 | 14.185 |
| UlaR | 256-275 | 14.027 |
| IdnR | 272-287 | 13.951 |
| Lrp | 279-290 | 13.926 |
| OxyR | 307-351 | 13.892 |
| Fur | 375-389 | 13.764 |
| GcvA | 83-111 | 13.601 |
| CytR | 63-102 | 13.557 |
| CRP | 324-345 | 13.537 |
| RcsB | 277-290 | 13.027 |
| ArgR | 32-47 | 12.953 |
| Ada | 264-291 | 12.926 |
| SoxS | 365-382 | 12.866 |
| FruR | 360-377 | 12.863 |
| MelR | 61-78 | 11.833 |
| GlpR | 83-102 | 11.629 |
| MetR | 248-271 | 11.520 |
| ArgP | 104-116 | 10.816 |
| PhoB | 295-314 | 10.457 |
| Nac | 91-105 | 10.097 |
| DeoR | 283-298 | 9.993 |
| NtrC | 229-245 | 9.894 |
| Mlc | 86-108 | 9.868 |
| NorR | 357-373 | 9.426 |
| AraC | 235-252 | 9.343 |
| CpxR | 318-332 | 9.323 |
| TyrR | 259-280 | 9.290 |
| DnaA | 92-100 | 9.246 |
| NarL | 258-264 | 9.197 |
| PurR | 208-223 | 9.009 |
| LexA | 277-296 | 8.833 |
| ModE | 265-291 | 8.747 |
| MarA | 63-83 | 8.670 |
| TorR | 215-224 | 7.973 |
| TrpR | 284-301 | 7.914 |
| UxuR | 312-329 | 7.429 |
| XylR | 279-296 | 7.022 |
| MalT | 24-33 | 6.946 |
| NarP | 320-326 | 6.379 |
| MetJ | 364-371 | 6.057 |
| CueR | 114-132 | 5.899 |
| GalR | 130-145 | 5.799 |
| GalS | 130-145 | 5.799 |