| TF name | Position | PWM scan score |
| ArcA | 28-88 | 27.970 |
| CysB | 211-252 | 19.464 |
| CytR | 43-82 | 18.856 |
| OmpR | 34-53 | 17.291 |
| DcuR | 47-101 | 17.255 |
| PspF | 38-54 | 17.135 |
| GcvA | 239-267 | 16.997 |
| OxyR | 27-71 | 16.736 |
| PhoP | 60-76 | 16.014 |
| GlpR | 354-373 | 15.992 |
| AgaR | 7-30 | 15.742 |
| Fis | 289-309 | 15.725 |
| H-NS | 3-17 | 15.151 |
| GadE | 197-216 | 14.907 |
| FNR | 18-39 | 14.347 |
| SoxS | 188-205 | 14.183 |
| ModE | 289-315 | 13.898 |
| ArgP | 185-197 | 13.809 |
| UxuR | 115-132 | 13.402 |
| TyrR | 174-195 | 13.359 |
| PhoB | 25-44 | 13.005 |
| CRP | 364-385 | 12.985 |
| MarA | 289-309 | 12.905 |
| IHF | 194-206 | 12.707 |
| Rob | 68-88 | 12.665 |
| Nac | 68-82 | 12.594 |
| Fur | 289-303 | 12.315 |
| NagC | 184-206 | 12.291 |
| GntR | 264-283 | 12.268 |
| ArgR | 1-16 | 12.214 |
| MelR | 352-369 | 12.203 |
| AraC | 214-231 | 12.108 |
| LexA | 155-174 | 11.567 |
| Lrp | 170-181 | 11.415 |
| UlaR | 157-176 | 11.014 |
| PurR | 261-276 | 10.916 |
| Mlc | 363-385 | 10.463 |
| TorR | 158-167 | 10.329 |
| IdnR | 187-202 | 10.026 |
| NarL | 260-266 | 9.994 |
| MetJ | 322-329 | 9.980 |
| FruR | 66-83 | 9.604 |
| CpxR | 243-257 | 9.587 |
| FadR | 109-125 | 9.110 |
| Ada | 109-136 | 8.994 |
| XylR | 41-58 | 8.956 |
| NorR | 52-68 | 8.593 |
| DeoR | 373-388 | 8.385 |
| DnaA | 339-347 | 8.349 |
| CueR | 332-350 | 8.236 |
| NarP | 265-271 | 7.806 |
| GalR | 261-276 | 7.140 |
| GalS | 261-276 | 7.140 |
| MetR | 270-293 | 6.541 |
| RcsB | 259-272 | 6.534 |
| LacI | 299-319 | 6.489 |
| FhlA | 66-105 | 6.071 |
| RhaS | 95-111 | 5.833 |
| MalT | 170-179 | 5.089 |