| TF name | Position | PWM scan score |
| CysB | 183-224 | 20.949 |
| ArcA | 332-392 | 17.378 |
| FNR | 96-117 | 16.082 |
| OmpR | 337-356 | 15.969 |
| IdnR | 242-257 | 15.502 |
| UlaR | 181-200 | 14.855 |
| NagC | 338-360 | 14.789 |
| AgaR | 176-199 | 14.577 |
| Mlc | 131-153 | 13.722 |
| GlpR | 366-385 | 13.633 |
| ArgP | 133-145 | 13.415 |
| GcvA | 346-374 | 13.178 |
| RcsB | 298-311 | 12.900 |
| MelR | 14-31 | 12.259 |
| Fis | 340-360 | 12.240 |
| Fur | 96-110 | 12.205 |
| Nac | 339-353 | 12.038 |
| XylR | 194-211 | 11.854 |
| FhlA | 196-235 | 11.844 |
| CRP | 364-385 | 11.455 |
| CytR | 178-217 | 11.432 |
| IHF | 349-361 | 10.741 |
| DcuR | 326-380 | 10.681 |
| PhoB | 239-258 | 10.531 |
| NarL | 146-152 | 10.377 |
| Lrp | 198-209 | 10.364 |
| SoxS | 89-106 | 10.316 |
| DeoR | 253-268 | 10.129 |
| H-NS | 339-353 | 9.852 |
| GadE | 339-358 | 9.647 |
| PhoP | 334-350 | 9.641 |
| MarA | 87-107 | 9.529 |
| OxyR | 47-91 | 9.463 |
| GntR | 117-136 | 9.345 |
| RhaS | 96-112 | 9.254 |
| MetR | 324-347 | 8.810 |
| TorR | 195-204 | 8.720 |
| DnaA | 203-211 | 8.618 |
| LexA | 115-134 | 8.526 |
| NarP | 12-18 | 8.509 |
| LacI | 336-356 | 8.453 |
| ModE | 6-32 | 8.293 |
| NorR | 177-193 | 8.093 |
| PurR | 7-22 | 7.983 |
| TyrR | 347-368 | 7.777 |
| FadR | 234-250 | 7.536 |
| CpxR | 136-150 | 7.455 |
| Rob | 175-195 | 7.185 |
| AraC | 294-311 | 6.972 |
| ArgR | 52-67 | 6.782 |
| PspF | 84-100 | 6.421 |
| Ada | 172-199 | 6.194 |
| UxuR | 340-357 | 5.915 |
| FruR | 55-72 | 5.526 |