| TF name | Position | PWM scan score |
| ArcA | 324-384 | 28.644 |
| CysB | 323-364 | 21.622 |
| NagC | 342-364 | 21.058 |
| OxyR | 305-349 | 18.102 |
| ArgR | 355-370 | 17.914 |
| PhoB | 349-368 | 16.391 |
| CytR | 297-336 | 16.297 |
| SoxS | 285-302 | 15.406 |
| H-NS | 351-365 | 15.232 |
| DeoR | 307-322 | 15.039 |
| MarA | 283-303 | 15.030 |
| FNR | 79-100 | 14.496 |
| Fur | 356-370 | 14.228 |
| CpxR | 307-321 | 14.174 |
| OmpR | 361-380 | 13.726 |
| GalR | 314-329 | 13.046 |
| GalS | 314-329 | 13.046 |
| CRP | 297-318 | 12.817 |
| ModE | 319-345 | 12.715 |
| GadE | 351-370 | 12.689 |
| AraC | 353-370 | 12.453 |
| NorR | 299-315 | 12.367 |
| UxuR | 118-135 | 12.066 |
| GcvA | 66-94 | 11.855 |
| Rob | 146-166 | 11.485 |
| IHF | 154-166 | 11.472 |
| Fis | 232-252 | 11.377 |
| Mlc | 311-333 | 11.184 |
| GlpR | 341-360 | 10.531 |
| Lrp | 73-84 | 10.371 |
| TyrR | 201-222 | 10.262 |
| PspF | 117-133 | 10.178 |
| MelR | 295-312 | 10.137 |
| PhoP | 201-217 | 10.131 |
| AgaR | 305-328 | 9.956 |
| IdnR | 354-369 | 9.838 |
| FadR | 79-95 | 9.835 |
| NarP | 175-181 | 9.680 |
| Ada | 58-85 | 9.541 |
| XylR | 87-104 | 9.506 |
| DnaA | 78-86 | 9.246 |
| NarL | 354-360 | 9.240 |
| RcsB | 274-287 | 9.060 |
| ArgP | 351-363 | 8.862 |
| Nac | 275-289 | 8.251 |
| NtrC | 102-118 | 7.437 |
| GntR | 344-363 | 6.927 |
| DcuR | 180-234 | 6.763 |
| TorR | 210-219 | 6.399 |
| UlaR | 268-287 | 6.197 |
| FruR | 94-111 | 6.188 |
| PurR | 314-329 | 5.904 |
| CueR | 282-300 | 5.812 |
| MetJ | 250-257 | 5.785 |
| MetR | 329-352 | 5.673 |