| TF name | Position | PWM scan score |
| PspF | 377-393 | 16.967 |
| CytR | 38-77 | 15.719 |
| CysB | 157-198 | 14.865 |
| ArcA | 339-399 | 14.782 |
| GlpR | 13-32 | 13.499 |
| NorR | 38-54 | 12.995 |
| CRP | 42-63 | 12.964 |
| H-NS | 183-197 | 12.808 |
| OmpR | 378-397 | 12.435 |
| Rob | 181-201 | 12.229 |
| DeoR | 384-399 | 12.217 |
| OxyR | 21-65 | 12.196 |
| TyrR | 35-56 | 11.983 |
| ArgP | 387-399 | 11.915 |
| PhoP | 214-230 | 11.709 |
| Fis | 320-340 | 11.696 |
| GadE | 95-114 | 11.560 |
| MelR | 218-235 | 11.373 |
| Nac | 381-395 | 11.205 |
| GntR | 181-200 | 11.033 |
| IHF | 186-198 | 10.235 |
| MetJ | 192-199 | 9.666 |
| PhoB | 41-60 | 9.646 |
| XylR | 179-196 | 9.619 |
| MetR | 208-231 | 9.262 |
| CpxR | 241-255 | 9.139 |
| UlaR | 354-373 | 9.123 |
| DnaA | 188-196 | 9.060 |
| MarA | 228-248 | 8.962 |
| FNR | 45-66 | 8.860 |
| Fur | 383-397 | 8.332 |
| RhaS | 231-247 | 8.285 |
| AraC | 357-374 | 8.102 |
| NarL | 359-365 | 8.033 |
| Lrp | 383-394 | 7.973 |
| IdnR | 376-391 | 7.162 |
| UxuR | 263-280 | 6.989 |
| RcsB | 183-196 | 6.663 |
| SoxS | 230-247 | 6.416 |
| MalT | 128-137 | 6.380 |
| ArgR | 213-228 | 6.180 |
| AgaR | 363-386 | 6.149 |
| GalS | 223-238 | 5.883 |
| GalR | 223-238 | 5.883 |
| TorR | 189-198 | 5.833 |
| NtrC | 180-196 | 5.736 |
| NarP | 389-395 | 5.708 |
| FadR | 56-72 | 5.544 |