| TF name | Position | PWM scan score |
| ArcA | 328-388 | 28.999 |
| CysB | 347-388 | 20.373 |
| CRP | 202-223 | 20.109 |
| FNR | 359-380 | 18.401 |
| OmpR | 117-136 | 17.529 |
| PspF | 72-88 | 16.967 |
| CytR | 266-305 | 16.421 |
| PhoB | 131-150 | 16.231 |
| NagC | 365-387 | 15.759 |
| XylR | 138-155 | 15.406 |
| Fur | 125-139 | 15.383 |
| AgaR | 352-375 | 14.340 |
| Nac | 351-365 | 14.041 |
| H-NS | 119-133 | 14.037 |
| DcuR | 240-294 | 13.750 |
| PhoP | 126-142 | 13.458 |
| IHF | 355-367 | 13.260 |
| GcvA | 261-289 | 13.228 |
| GlpR | 114-133 | 13.111 |
| DeoR | 79-94 | 12.217 |
| GadE | 253-272 | 12.093 |
| MarA | 261-281 | 12.014 |
| ArgP | 82-94 | 11.915 |
| OxyR | 82-126 | 11.843 |
| Fis | 15-35 | 11.696 |
| Mlc | 318-340 | 11.121 |
| TyrR | 325-346 | 10.975 |
| FadR | 89-105 | 10.872 |
| NtrC | 349-365 | 10.831 |
| Lrp | 362-373 | 10.822 |
| UxuR | 259-276 | 10.817 |
| MelR | 263-280 | 10.758 |
| GntR | 338-357 | 10.735 |
| UlaR | 351-370 | 10.638 |
| ArgR | 127-142 | 10.469 |
| RcsB | 97-110 | 10.195 |
| ModE | 354-380 | 9.957 |
| GalR | 154-169 | 9.944 |
| GalS | 154-169 | 9.944 |
| AraC | 135-152 | 9.904 |
| CpxR | 264-278 | 9.698 |
| Rob | 208-228 | 9.517 |
| NarL | 380-386 | 9.333 |
| MetR | 366-389 | 9.221 |
| NorR | 358-374 | 8.976 |
| PurR | 154-169 | 8.878 |
| TorR | 358-367 | 8.848 |
| IdnR | 371-386 | 8.579 |
| MetJ | 15-22 | 8.379 |
| DnaA | 367-375 | 8.304 |
| SoxS | 372-389 | 8.136 |
| Ada | 128-155 | 7.913 |
| NarP | 84-90 | 5.708 |
| FruR | 375-392 | 5.044 |