| TF name | Position | PWM scan score |
| ArcA | 20-80 | 28.999 |
| ArgR | 367-382 | 20.434 |
| CysB | 39-80 | 20.373 |
| NagC | 175-197 | 18.955 |
| FNR | 51-72 | 18.401 |
| DcuR | 260-314 | 15.267 |
| UlaR | 181-200 | 14.340 |
| AgaR | 44-67 | 14.340 |
| IdnR | 335-350 | 14.149 |
| Nac | 43-57 | 14.041 |
| Mlc | 177-199 | 13.526 |
| SoxS | 366-383 | 13.353 |
| IHF | 47-59 | 13.260 |
| OmpR | 370-389 | 12.974 |
| GcvA | 132-160 | 12.875 |
| Fur | 372-386 | 12.530 |
| NorR | 300-316 | 12.367 |
| CRP | 97-118 | 12.240 |
| CpxR | 324-338 | 11.863 |
| UxuR | 318-335 | 11.824 |
| DnaA | 235-243 | 11.552 |
| MetJ | 92-99 | 11.400 |
| H-NS | 16-30 | 11.370 |
| PhoB | 368-387 | 11.370 |
| PhoP | 323-339 | 11.355 |
| TyrR | 17-38 | 10.975 |
| NtrC | 41-57 | 10.831 |
| Lrp | 54-65 | 10.822 |
| GntR | 30-49 | 10.735 |
| Fis | 372-392 | 10.621 |
| ArgP | 114-126 | 10.402 |
| OxyR | 12-56 | 10.130 |
| GadE | 17-36 | 10.028 |
| ModE | 46-72 | 9.957 |
| AraC | 92-109 | 9.778 |
| FhlA | 354-393 | 9.492 |
| NarL | 370-376 | 9.444 |
| Ada | 68-95 | 9.360 |
| MetR | 58-81 | 9.221 |
| DeoR | 20-35 | 9.094 |
| CytR | 44-83 | 9.066 |
| Rob | 57-77 | 9.037 |
| TorR | 50-59 | 8.848 |
| FruR | 101-118 | 8.233 |
| PspF | 368-384 | 7.838 |
| RcsB | 260-273 | 7.458 |
| MarA | 310-330 | 7.266 |
| XylR | 268-285 | 7.104 |
| TrpR | 265-282 | 6.961 |
| GlpR | 271-290 | 6.949 |
| NarP | 112-118 | 6.794 |
| PurR | 65-80 | 6.525 |
| GalR | 65-80 | 6.340 |
| GalS | 65-80 | 6.340 |
| FadR | 198-214 | 5.928 |
| LexA | 255-274 | 5.230 |