| TF name | Position | PWM scan score |
| ArcA | 139-199 | 26.096 |
| Mlc | 162-184 | 17.808 |
| NagC | 164-186 | 16.601 |
| CysB | 150-191 | 16.170 |
| Rob | 373-393 | 15.851 |
| GadE | 179-198 | 14.408 |
| OmpR | 179-198 | 14.279 |
| UlaR | 127-146 | 13.998 |
| ModE | 247-273 | 13.587 |
| PhoP | 279-295 | 13.358 |
| TorR | 285-294 | 13.229 |
| Fis | 174-194 | 12.898 |
| AraC | 170-187 | 12.883 |
| GlpR | 129-148 | 12.565 |
| FNR | 179-200 | 12.367 |
| H-NS | 177-191 | 12.341 |
| OxyR | 224-268 | 12.330 |
| CRP | 163-184 | 12.246 |
| IHF | 155-167 | 11.984 |
| TyrR | 160-181 | 11.639 |
| Fur | 127-141 | 11.529 |
| IdnR | 156-171 | 11.453 |
| UxuR | 195-212 | 11.448 |
| RhaS | 196-212 | 11.442 |
| MarA | 177-197 | 11.316 |
| Ada | 189-216 | 10.975 |
| NorR | 236-252 | 10.648 |
| FruR | 278-295 | 10.640 |
| PhoB | 282-301 | 10.637 |
| Nac | 284-298 | 10.413 |
| LacI | 164-184 | 10.219 |
| Lrp | 178-189 | 9.771 |
| CytR | 180-219 | 9.546 |
| RcsB | 130-143 | 9.468 |
| MalT | 235-244 | 9.326 |
| NarL | 384-390 | 9.240 |
| ArgR | 180-195 | 8.965 |
| XylR | 162-179 | 8.875 |
| NarP | 246-252 | 8.306 |
| AgaR | 176-199 | 8.247 |
| PspF | 246-262 | 8.026 |
| SoxS | 164-181 | 7.752 |
| CpxR | 234-248 | 7.683 |
| GntR | 346-365 | 7.594 |
| MelR | 183-200 | 7.388 |
| MetJ | 292-299 | 7.171 |
| FhlA | 272-311 | 7.140 |
| GcvA | 160-188 | 6.985 |
| LexA | 206-225 | 6.957 |
| NtrC | 173-189 | 6.623 |
| ArgP | 381-393 | 6.413 |
| MetR | 164-187 | 6.208 |
| DnaA | 168-176 | 5.663 |
| GalS | 206-221 | 5.524 |
| GalR | 206-221 | 5.524 |
| DeoR | 265-280 | 5.502 |