| TF name | Position | PWM scan score |
| ArcA | 169-229 | 26.520 |
| CysB | 4-45 | 24.219 |
| UxuR | 154-171 | 19.382 |
| CytR | 276-315 | 18.430 |
| NagC | 185-207 | 17.608 |
| MetR | 186-209 | 17.187 |
| UlaR | 275-294 | 17.174 |
| FNR | 4-25 | 16.457 |
| TyrR | 189-210 | 15.683 |
| GadE | 187-206 | 15.546 |
| ModE | 191-217 | 14.751 |
| IHF | 191-203 | 14.690 |
| RcsB | 39-52 | 14.499 |
| FadR | 305-321 | 14.418 |
| GlpR | 376-395 | 14.025 |
| CRP | 275-296 | 13.769 |
| OmpR | 185-204 | 13.694 |
| H-NS | 29-43 | 12.937 |
| GcvA | 181-209 | 12.859 |
| Rob | 194-214 | 12.610 |
| Nac | 2-16 | 12.601 |
| OxyR | 168-212 | 12.206 |
| XylR | 336-353 | 12.025 |
| MarA | 332-352 | 11.978 |
| DeoR | 185-200 | 11.942 |
| CpxR | 160-174 | 11.880 |
| ArgR | 335-350 | 11.820 |
| AraC | 353-370 | 11.731 |
| Fis | 189-209 | 11.675 |
| PhoP | 189-205 | 11.594 |
| AgaR | 153-176 | 11.502 |
| Fur | 4-18 | 11.049 |
| Mlc | 267-289 | 10.856 |
| MelR | 197-214 | 10.625 |
| GntR | 183-202 | 10.623 |
| PspF | 179-195 | 10.524 |
| NarL | 5-11 | 10.130 |
| Lrp | 281-292 | 10.053 |
| ArgP | 382-394 | 9.831 |
| PhoB | 196-215 | 9.822 |
| Ada | 354-381 | 9.702 |
| RhaS | 77-93 | 9.375 |
| SoxS | 186-203 | 9.136 |
| GalS | 126-141 | 8.642 |
| GalR | 126-141 | 8.642 |
| TorR | 133-142 | 8.402 |
| FruR | 192-209 | 8.336 |
| DnaA | 160-168 | 8.323 |
| DcuR | 192-246 | 8.126 |
| NarP | 218-224 | 6.879 |
| MalT | 347-356 | 6.475 |
| NorR | 63-79 | 5.766 |
| NtrC | 203-219 | 5.682 |
| FhlA | 322-361 | 5.350 |
| IdnR | 189-204 | 5.208 |
| MetJ | 294-301 | 5.059 |