| TF name | Position | PWM scan score |
| ArcA | 294-354 | 33.851 |
| CysB | 339-380 | 27.691 |
| DcuR | 278-332 | 22.517 |
| TyrR | 298-319 | 18.891 |
| CpxR | 247-261 | 18.706 |
| Nac | 368-382 | 18.315 |
| NagC | 304-326 | 18.000 |
| Ada | 274-301 | 17.952 |
| ModE | 291-317 | 17.840 |
| UlaR | 342-361 | 17.831 |
| OmpR | 377-396 | 17.137 |
| FNR | 308-329 | 16.389 |
| AgaR | 333-356 | 16.311 |
| GadE | 308-327 | 15.996 |
| GcvA | 16-44 | 15.555 |
| Mlc | 252-274 | 14.625 |
| OxyR | 184-228 | 14.611 |
| FadR | 49-65 | 14.316 |
| IHF | 11-23 | 14.036 |
| LexA | 288-307 | 13.639 |
| H-NS | 304-318 | 13.585 |
| GlpR | 380-399 | 12.853 |
| Rob | 367-387 | 12.725 |
| PhoB | 294-313 | 12.660 |
| MarA | 16-36 | 12.599 |
| Fis | 12-32 | 12.590 |
| CytR | 304-343 | 12.513 |
| PhoP | 292-308 | 12.259 |
| CRP | 352-373 | 12.079 |
| GntR | 303-322 | 11.897 |
| ArgR | 283-298 | 11.500 |
| FhlA | 351-390 | 11.416 |
| Lrp | 212-223 | 11.316 |
| XylR | 342-359 | 11.290 |
| RcsB | 321-334 | 11.002 |
| ArgP | 386-398 | 10.920 |
| MetR | 1-24 | 10.782 |
| AraC | 84-101 | 10.776 |
| TorR | 343-352 | 10.649 |
| DeoR | 205-220 | 10.646 |
| SoxS | 299-316 | 10.544 |
| GalR | 356-371 | 9.445 |
| GalS | 356-371 | 9.445 |
| PspF | 129-145 | 8.647 |
| NtrC | 281-297 | 8.562 |
| UxuR | 291-308 | 8.487 |
| MelR | 173-190 | 8.377 |
| DnaA | 205-213 | 8.280 |
| NarL | 293-299 | 8.131 |
| NorR | 176-192 | 7.801 |
| NarP | 287-293 | 7.762 |
| Fur | 346-360 | 6.860 |
| LacI | 252-272 | 6.677 |
| FruR | 377-394 | 6.312 |
| MetJ | 298-305 | 6.199 |
| IdnR | 341-356 | 5.564 |