| TF name | Position | PWM scan score |
| ArcA | 272-332 | 31.630 |
| CysB | 303-344 | 21.862 |
| GadE | 304-323 | 19.565 |
| OmpR | 306-325 | 18.876 |
| AgaR | 360-383 | 18.017 |
| FNR | 317-338 | 17.727 |
| PhoP | 304-320 | 16.811 |
| CytR | 304-343 | 16.666 |
| H-NS | 317-331 | 16.383 |
| OxyR | 163-207 | 16.159 |
| Nac | 100-114 | 16.051 |
| NagC | 320-342 | 15.989 |
| IHF | 75-87 | 15.685 |
| ModE | 362-388 | 15.605 |
| CRP | 26-47 | 14.793 |
| DcuR | 324-378 | 14.720 |
| Mlc | 140-162 | 14.413 |
| Fis | 147-167 | 14.359 |
| MarA | 17-37 | 14.225 |
| DeoR | 143-158 | 14.153 |
| AraC | 203-220 | 13.533 |
| FadR | 330-346 | 13.369 |
| GlpR | 316-335 | 13.047 |
| Rob | 67-87 | 12.750 |
| Ada | 153-180 | 12.519 |
| UlaR | 307-326 | 12.452 |
| GntR | 168-187 | 12.125 |
| SoxS | 20-37 | 11.897 |
| MetJ | 87-94 | 11.889 |
| PhoB | 306-325 | 11.560 |
| RcsB | 194-207 | 11.497 |
| ArgR | 51-66 | 11.341 |
| GcvA | 299-327 | 11.320 |
| TyrR | 147-168 | 11.060 |
| Lrp | 68-79 | 10.915 |
| MelR | 148-165 | 10.703 |
| CpxR | 304-318 | 10.068 |
| FruR | 150-167 | 9.941 |
| NorR | 372-388 | 9.859 |
| UxuR | 95-112 | 9.823 |
| Fur | 311-325 | 9.343 |
| IdnR | 88-103 | 9.331 |
| NarL | 109-115 | 9.129 |
| ArgP | 227-239 | 9.096 |
| XylR | 271-288 | 8.487 |
| LacI | 170-190 | 8.463 |
| MetR | 159-182 | 8.376 |
| GalS | 54-69 | 7.923 |
| GalR | 54-69 | 7.923 |
| MalT | 387-396 | 7.887 |
| PspF | 26-42 | 7.865 |
| TorR | 361-370 | 7.850 |
| DnaA | 201-209 | 7.532 |
| NarP | 102-108 | 6.229 |
| CueR | 266-284 | 6.067 |
| PurR | 54-69 | 5.939 |