| TF name | Position | PWM scan score |
| ArcA | 41-101 | 18.838 |
| AgaR | 168-191 | 17.881 |
| MetR | 69-92 | 14.968 |
| IHF | 14-26 | 13.581 |
| AraC | 15-32 | 13.509 |
| CysB | 68-109 | 13.495 |
| UlaR | 181-200 | 13.361 |
| GcvA | 58-86 | 13.335 |
| ArgP | 189-201 | 12.720 |
| Ada | 167-194 | 12.298 |
| MarA | 202-222 | 12.061 |
| OmpR | 375-394 | 11.753 |
| H-NS | 34-48 | 11.651 |
| FhlA | 184-223 | 11.352 |
| OxyR | 29-73 | 11.251 |
| Fis | 24-44 | 11.182 |
| Nac | 327-341 | 11.180 |
| PhoB | 181-200 | 11.059 |
| GntR | 92-111 | 10.839 |
| FNR | 140-161 | 10.703 |
| PurR | 15-30 | 10.666 |
| CRP | 65-86 | 10.535 |
| GlpR | 60-79 | 10.333 |
| GadE | 325-344 | 10.309 |
| IdnR | 175-190 | 10.214 |
| SoxS | 176-193 | 9.648 |
| NorR | 142-158 | 9.587 |
| NagC | 295-317 | 9.416 |
| DeoR | 69-84 | 9.251 |
| LacI | 154-174 | 9.010 |
| DnaA | 13-21 | 8.892 |
| Lrp | 308-319 | 8.769 |
| ArgR | 305-320 | 8.563 |
| CpxR | 245-259 | 8.502 |
| MelR | 357-374 | 8.455 |
| NarP | 167-173 | 8.306 |
| PhoP | 28-44 | 8.218 |
| XylR | 60-77 | 8.215 |
| RhaS | 89-105 | 8.188 |
| MetJ | 191-198 | 8.047 |
| FadR | 213-229 | 7.843 |
| RcsB | 167-180 | 7.670 |
| PspF | 31-47 | 7.143 |
| CytR | 134-173 | 6.932 |
| ModE | 24-50 | 6.804 |
| UxuR | 160-177 | 6.737 |
| NarL | 196-202 | 6.689 |
| Mlc | 295-317 | 6.670 |
| Rob | 5-25 | 6.516 |
| TorR | 247-256 | 5.994 |
| TyrR | 179-200 | 5.802 |