| TF name | Position | PWM scan score |
| ArcA | 337-397 | 24.697 |
| AgaR | 278-301 | 17.470 |
| OxyR | 333-377 | 15.985 |
| FhlA | 115-154 | 14.368 |
| ModE | 8-34 | 14.207 |
| ArgR | 169-184 | 13.608 |
| CytR | 18-57 | 13.565 |
| PhoP | 373-389 | 13.430 |
| MelR | 346-363 | 13.349 |
| GcvA | 239-267 | 13.317 |
| Fur | 57-71 | 13.230 |
| NagC | 354-376 | 13.209 |
| CysB | 280-321 | 13.189 |
| Fis | 93-113 | 13.026 |
| IHF | 367-379 | 12.856 |
| H-NS | 366-380 | 12.693 |
| AraC | 141-158 | 12.693 |
| OmpR | 367-386 | 12.680 |
| FNR | 229-250 | 11.786 |
| CRP | 361-382 | 11.709 |
| PhoB | 229-248 | 11.653 |
| TyrR | 287-308 | 11.629 |
| GntR | 39-58 | 11.468 |
| RcsB | 376-389 | 11.147 |
| Nac | 371-385 | 11.124 |
| Lrp | 293-304 | 11.029 |
| ArgP | 292-304 | 10.977 |
| MarA | 360-380 | 10.574 |
| CpxR | 326-340 | 10.468 |
| TorR | 290-299 | 10.329 |
| DnaA | 374-382 | 9.731 |
| MetR | 357-380 | 9.682 |
| DeoR | 339-354 | 9.597 |
| UlaR | 342-361 | 9.450 |
| NarL | 366-372 | 9.444 |
| Mlc | 372-394 | 9.271 |
| PspF | 41-57 | 9.097 |
| XylR | 192-209 | 8.768 |
| LexA | 258-277 | 8.708 |
| Rob | 66-86 | 8.684 |
| GadE | 287-306 | 8.432 |
| IdnR | 206-221 | 8.411 |
| SoxS | 48-65 | 8.359 |
| NarP | 213-219 | 8.306 |
| LacI | 197-217 | 8.070 |
| NorR | 68-84 | 7.710 |
| PurR | 271-286 | 7.365 |
| FruR | 356-373 | 7.214 |
| GlpR | 219-238 | 7.139 |
| Ada | 312-339 | 6.936 |
| FadR | 102-118 | 6.749 |
| GalR | 49-64 | 6.668 |
| GalS | 49-64 | 6.668 |
| RhaS | 105-121 | 6.623 |
| UxuR | 369-386 | 6.180 |
| NtrC | 124-140 | 5.777 |
| MetJ | 254-261 | 5.595 |
| DcuR | 268-322 | 5.269 |