| TF name | Position | PWM scan score |
| ArcA | 335-395 | 19.191 |
| NagC | 17-39 | 17.934 |
| MarA | 121-141 | 15.049 |
| GntR | 176-195 | 14.194 |
| OxyR | 309-353 | 13.588 |
| CysB | 5-46 | 13.422 |
| OmpR | 191-210 | 13.057 |
| Rob | 119-139 | 12.901 |
| DeoR | 330-345 | 12.031 |
| Fis | 329-349 | 12.013 |
| H-NS | 211-225 | 11.867 |
| CpxR | 384-398 | 11.550 |
| FNR | 277-298 | 11.245 |
| IHF | 382-394 | 11.042 |
| PhoP | 352-368 | 11.021 |
| DnaA | 93-101 | 10.950 |
| CRP | 350-371 | 10.916 |
| RcsB | 128-141 | 10.287 |
| GlpR | 297-316 | 10.107 |
| XylR | 84-101 | 9.778 |
| ArgP | 336-348 | 9.643 |
| FadR | 295-311 | 9.469 |
| UlaR | 34-53 | 9.445 |
| SoxS | 179-196 | 9.379 |
| ModE | 31-57 | 9.361 |
| NtrC | 145-161 | 9.236 |
| Nac | 201-215 | 9.228 |
| Fur | 338-352 | 9.200 |
| Mlc | 15-37 | 9.076 |
| CytR | 305-344 | 8.899 |
| GcvA | 258-286 | 8.811 |
| NarL | 20-26 | 8.681 |
| PhoB | 380-399 | 8.643 |
| Ada | 28-55 | 8.373 |
| AraC | 185-202 | 8.351 |
| IdnR | 36-51 | 8.253 |
| ArgR | 374-389 | 8.188 |
| AgaR | 359-382 | 8.079 |
| UxuR | 35-52 | 7.859 |
| GadE | 349-368 | 7.699 |
| FruR | 27-44 | 7.625 |
| Lrp | 65-76 | 7.560 |
| NarP | 267-273 | 7.144 |
| PspF | 210-226 | 7.059 |
| TyrR | 372-393 | 6.982 |
| GalS | 180-195 | 6.821 |
| GalR | 180-195 | 6.821 |
| MalT | 71-80 | 6.687 |
| DcuR | 5-59 | 6.239 |
| NorR | 337-353 | 6.035 |
| MetJ | 374-381 | 6.028 |
| FhlA | 144-183 | 5.947 |
| TorR | 130-139 | 5.908 |
| MetR | 34-57 | 5.867 |
| MelR | 318-335 | 5.315 |
| LacI | 351-371 | 5.233 |