| TF name | Position | PWM scan score |
| CysB | 59-100 | 20.414 |
| GadE | 365-384 | 20.288 |
| Mlc | 159-181 | 19.668 |
| ArcA | 336-396 | 19.247 |
| UlaR | 327-346 | 18.450 |
| TyrR | 157-178 | 15.296 |
| Ada | 180-207 | 14.030 |
| NorR | 72-88 | 13.700 |
| OmpR | 14-33 | 13.432 |
| Nac | 167-181 | 13.425 |
| PhoB | 150-169 | 12.827 |
| NagC | 202-224 | 12.822 |
| FNR | 160-181 | 12.820 |
| Fis | 205-225 | 12.706 |
| CRP | 10-31 | 12.695 |
| AgaR | 326-349 | 12.518 |
| CytR | 145-184 | 12.458 |
| ArgP | 365-377 | 12.254 |
| H-NS | 361-375 | 12.130 |
| RcsB | 155-168 | 11.725 |
| GntR | 348-367 | 11.564 |
| MalT | 186-195 | 11.429 |
| MetJ | 363-370 | 11.100 |
| Lrp | 16-27 | 11.051 |
| MelR | 158-175 | 10.919 |
| IHF | 10-22 | 10.173 |
| PhoP | 297-313 | 9.703 |
| MarA | 139-159 | 9.517 |
| Rob | 321-341 | 9.379 |
| MetR | 269-292 | 9.192 |
| GlpR | 362-381 | 9.136 |
| DeoR | 169-184 | 9.058 |
| DcuR | 47-101 | 8.942 |
| UxuR | 66-83 | 8.940 |
| NarL | 368-374 | 8.728 |
| Fur | 330-344 | 8.727 |
| SoxS | 84-101 | 8.705 |
| AraC | 109-126 | 8.673 |
| NarP | 357-363 | 8.594 |
| GcvA | 11-39 | 8.525 |
| XylR | 116-133 | 8.520 |
| ArgR | 359-374 | 8.304 |
| CpxR | 70-84 | 8.169 |
| OxyR | 113-157 | 7.934 |
| FruR | 145-162 | 7.856 |
| IdnR | 146-161 | 7.632 |
| FhlA | 120-159 | 7.445 |
| TorR | 66-75 | 7.342 |
| LacI | 98-118 | 6.999 |
| PspF | 127-143 | 6.918 |
| LexA | 19-38 | 6.800 |
| GalR | 226-241 | 6.708 |
| GalS | 226-241 | 6.708 |
| RhaS | 238-254 | 6.415 |
| DnaA | 129-137 | 6.077 |
| ModE | 73-99 | 5.415 |
| CueR | 295-313 | 5.006 |