| TF name | Position | PWM scan score |
| ArcA | 312-372 | 42.878 |
| CysB | 325-366 | 27.592 |
| OxyR | 307-351 | 23.206 |
| Fur | 333-347 | 21.171 |
| PhoP | 326-342 | 17.561 |
| OmpR | 330-349 | 17.355 |
| CRP | 330-351 | 16.818 |
| FNR | 315-336 | 16.064 |
| PhoB | 329-348 | 15.095 |
| GlpR | 332-351 | 14.990 |
| Fis | 332-352 | 14.818 |
| IHF | 342-354 | 13.997 |
| H-NS | 329-343 | 13.783 |
| DeoR | 352-367 | 13.103 |
| NagC | 332-354 | 12.801 |
| GadE | 158-177 | 12.612 |
| GntR | 330-349 | 11.964 |
| SoxS | 350-367 | 11.963 |
| Nac | 331-345 | 11.958 |
| GcvA | 108-136 | 11.326 |
| RcsB | 144-157 | 11.234 |
| XylR | 308-325 | 11.049 |
| Lrp | 336-347 | 10.929 |
| DnaA | 142-150 | 10.924 |
| CytR | 335-374 | 10.818 |
| PspF | 46-62 | 10.628 |
| MarA | 348-368 | 10.408 |
| Mlc | 31-53 | 10.405 |
| NorR | 136-152 | 10.104 |
| NtrC | 243-259 | 9.693 |
| AraC | 144-161 | 9.635 |
| FadR | 73-89 | 9.517 |
| NarL | 334-340 | 9.129 |
| CpxR | 344-358 | 9.036 |
| ArgP | 334-346 | 8.523 |
| TorR | 332-341 | 8.399 |
| GalS | 343-358 | 8.314 |
| GalR | 343-358 | 8.314 |
| MetJ | 103-110 | 8.276 |
| ArgR | 335-350 | 8.269 |
| MelR | 191-208 | 8.232 |
| LacI | 58-78 | 8.094 |
| MetR | 138-161 | 7.804 |
| UlaR | 143-162 | 7.775 |
| UxuR | 46-63 | 7.768 |
| TyrR | 146-167 | 7.741 |
| ModE | 333-359 | 7.194 |
| TrpR | 239-256 | 6.911 |
| Rob | 324-344 | 6.607 |
| FruR | 308-325 | 6.525 |
| DcuR | 319-373 | 5.860 |
| Ada | 326-353 | 5.754 |
| AgaR | 123-146 | 5.713 |
| NarP | 339-345 | 5.708 |
| MalT | 3-12 | 5.199 |