| TF name | Position | PWM scan score |
| ArcA | 322-382 | 42.983 |
| CysB | 294-335 | 28.926 |
| CytR | 292-331 | 25.806 |
| OxyR | 107-151 | 19.545 |
| AgaR | 280-303 | 18.337 |
| FNR | 342-363 | 18.074 |
| DcuR | 308-362 | 17.840 |
| ArgR | 345-360 | 17.301 |
| IdnR | 159-174 | 17.295 |
| Nac | 362-376 | 17.246 |
| ModE | 121-147 | 17.208 |
| OmpR | 264-283 | 17.093 |
| Fur | 322-336 | 16.880 |
| PhoP | 336-352 | 16.645 |
| CRP | 310-331 | 16.469 |
| RcsB | 355-368 | 16.275 |
| Rob | 308-328 | 15.563 |
| ArgP | 347-359 | 15.484 |
| H-NS | 321-335 | 15.207 |
| Fis | 302-322 | 15.029 |
| XylR | 321-338 | 15.023 |
| MarA | 125-145 | 14.998 |
| TyrR | 289-310 | 14.736 |
| GcvA | 295-323 | 14.684 |
| Mlc | 295-317 | 14.670 |
| NagC | 292-314 | 13.991 |
| GadE | 292-311 | 13.970 |
| IHF | 322-334 | 13.491 |
| MetR | 273-296 | 13.153 |
| PhoB | 315-334 | 12.368 |
| AraC | 314-331 | 12.349 |
| TorR | 292-301 | 12.150 |
| RhaS | 332-348 | 11.802 |
| CpxR | 129-143 | 11.752 |
| DeoR | 291-306 | 11.418 |
| Lrp | 345-356 | 11.307 |
| GlpR | 365-384 | 11.144 |
| UlaR | 51-70 | 11.144 |
| LexA | 291-310 | 10.648 |
| CueR | 28-46 | 10.529 |
| NorR | 292-308 | 10.487 |
| PspF | 319-335 | 9.987 |
| CaiF | 30-74 | 9.952 |
| SoxS | 251-268 | 9.864 |
| FruR | 95-112 | 9.763 |
| TrpR | 178-195 | 9.740 |
| NarL | 324-330 | 9.376 |
| GalR | 99-114 | 8.896 |
| GalS | 99-114 | 8.896 |
| Ada | 325-352 | 8.880 |
| FhlA | 288-327 | 8.606 |
| NarP | 302-308 | 7.423 |
| GntR | 235-254 | 7.374 |
| FadR | 119-135 | 7.353 |
| DnaA | 297-305 | 7.218 |
| UxuR | 78-95 | 7.137 |
| MalT | 287-296 | 7.129 |
| MetJ | 171-178 | 7.044 |
| LacI | 64-84 | 7.006 |
| PurR | 161-176 | 6.794 |
| NtrC | 302-318 | 6.553 |
| MelR | 278-295 | 5.560 |