| TF name | Position | PWM scan score |
| ArcA | 296-356 | 30.874 |
| PhoP | 327-343 | 18.946 |
| OmpR | 296-315 | 18.706 |
| CysB | 326-367 | 18.311 |
| CpxR | 348-362 | 17.443 |
| CytR | 65-104 | 17.236 |
| FNR | 303-324 | 16.323 |
| GadE | 220-239 | 16.122 |
| PhoB | 74-93 | 15.851 |
| SoxS | 129-146 | 15.269 |
| DcuR | 279-333 | 15.244 |
| GalR | 217-232 | 14.658 |
| GalS | 217-232 | 14.658 |
| IHF | 303-315 | 14.617 |
| Fis | 263-283 | 14.274 |
| H-NS | 320-334 | 14.206 |
| OxyR | 346-390 | 14.074 |
| NagC | 162-184 | 14.058 |
| GntR | 295-314 | 13.913 |
| UlaR | 213-232 | 13.592 |
| Rob | 295-315 | 13.209 |
| DeoR | 148-163 | 13.054 |
| PspF | 270-286 | 13.042 |
| CRP | 297-318 | 12.692 |
| ModE | 266-292 | 12.639 |
| TyrR | 257-278 | 12.564 |
| GcvA | 215-243 | 12.258 |
| UxuR | 342-359 | 12.150 |
| DnaA | 284-292 | 11.958 |
| PurR | 217-232 | 11.796 |
| Nac | 205-219 | 11.645 |
| RcsB | 236-249 | 11.624 |
| ArgP | 261-273 | 11.600 |
| GlpR | 85-104 | 11.274 |
| Mlc | 282-304 | 11.167 |
| Lrp | 379-390 | 10.989 |
| MelR | 230-247 | 10.839 |
| NorR | 276-292 | 10.762 |
| AgaR | 214-237 | 10.679 |
| ArgR | 269-284 | 10.617 |
| XylR | 345-362 | 10.285 |
| MetR | 75-98 | 10.200 |
| Ada | 220-247 | 10.166 |
| TrpR | 261-278 | 10.035 |
| MarA | 48-68 | 9.539 |
| FruR | 334-351 | 8.937 |
| NarL | 122-128 | 8.932 |
| Fur | 210-224 | 8.482 |
| TorR | 162-171 | 8.052 |
| FhlA | 313-352 | 7.845 |
| AraC | 44-61 | 7.525 |
| FadR | 171-187 | 7.341 |
| MetJ | 263-270 | 7.327 |
| LexA | 377-396 | 7.235 |
| IdnR | 315-330 | 7.189 |
| NarP | 320-326 | 6.860 |
| MalT | 364-373 | 6.705 |
| RhaS | 283-299 | 5.614 |
| CueR | 21-39 | 5.006 |