| TF name | Position | PWM scan score |
| ArcA | 206-266 | 22.507 |
| AgaR | 208-231 | 22.240 |
| Fur | 6-20 | 17.675 |
| OmpR | 250-269 | 15.994 |
| MarA | 252-272 | 14.774 |
| DeoR | 16-31 | 13.840 |
| CRP | 326-347 | 13.491 |
| GadE | 293-312 | 13.243 |
| FNR | 245-266 | 13.222 |
| CysB | 192-233 | 13.017 |
| IHF | 92-104 | 12.302 |
| GlpR | 359-378 | 11.893 |
| H-NS | 218-232 | 11.874 |
| MetR | 99-122 | 11.607 |
| Lrp | 224-235 | 11.561 |
| RcsB | 111-124 | 11.441 |
| Mlc | 229-251 | 11.404 |
| XylR | 257-274 | 11.303 |
| PhoP | 383-399 | 11.090 |
| OxyR | 39-83 | 11.030 |
| TyrR | 214-235 | 10.908 |
| GcvA | 212-240 | 10.788 |
| Nac | 4-18 | 10.461 |
| CpxR | 226-240 | 10.355 |
| ArgR | 314-329 | 10.239 |
| NarL | 97-103 | 10.130 |
| PhoB | 311-330 | 9.888 |
| AraC | 102-119 | 9.797 |
| NarP | 84-90 | 9.680 |
| Fis | 364-384 | 9.642 |
| Rob | 259-279 | 9.572 |
| IdnR | 115-130 | 9.492 |
| ModE | 210-236 | 9.490 |
| MelR | 215-232 | 9.286 |
| NorR | 205-221 | 9.137 |
| SoxS | 362-379 | 9.067 |
| DcuR | 82-136 | 9.036 |
| ArgP | 223-235 | 8.671 |
| NagC | 15-37 | 8.657 |
| RhaS | 140-156 | 8.570 |
| PspF | 315-331 | 8.553 |
| TorR | 196-205 | 8.052 |
| UlaR | 296-315 | 7.847 |
| CytR | 105-144 | 7.451 |
| CaiF | 122-166 | 7.381 |
| FadR | 304-320 | 7.244 |
| LexA | 133-152 | 7.062 |
| LacI | 238-258 | 6.687 |
| UxuR | 220-237 | 6.271 |
| DnaA | 82-90 | 6.254 |
| Ada | 95-122 | 6.204 |
| MetJ | 342-349 | 5.813 |
| NtrC | 244-260 | 5.607 |
| GntR | 303-322 | 5.562 |
| CueR | 358-376 | 5.073 |