| TF name | Position | PWM scan score |
| ArcA | 324-384 | 34.582 |
| CysB | 312-353 | 27.673 |
| OmpR | 358-377 | 24.431 |
| CytR | 350-389 | 24.033 |
| OxyR | 347-391 | 21.978 |
| ArgR | 354-369 | 20.662 |
| AgaR | 140-163 | 17.553 |
| Fis | 160-180 | 15.787 |
| Fur | 351-365 | 15.491 |
| CpxR | 359-373 | 14.947 |
| DeoR | 298-313 | 14.736 |
| ModE | 337-363 | 14.585 |
| FNR | 351-372 | 14.445 |
| MetR | 346-369 | 14.415 |
| NagC | 348-370 | 14.411 |
| IHF | 357-369 | 14.288 |
| GcvA | 358-386 | 14.096 |
| H-NS | 361-375 | 13.876 |
| GadE | 360-379 | 13.659 |
| Ada | 301-328 | 13.557 |
| PhoP | 263-279 | 13.435 |
| Mlc | 321-343 | 12.992 |
| DcuR | 86-140 | 12.937 |
| RcsB | 358-371 | 12.716 |
| Nac | 368-382 | 12.466 |
| MarA | 312-332 | 12.376 |
| SoxS | 198-215 | 12.094 |
| Rob | 367-387 | 12.018 |
| PspF | 147-163 | 11.941 |
| Lrp | 99-110 | 11.555 |
| ArgP | 346-358 | 11.397 |
| CRP | 345-366 | 11.309 |
| UlaR | 145-164 | 11.286 |
| MelR | 327-344 | 11.168 |
| PhoB | 212-231 | 10.451 |
| XylR | 114-131 | 10.131 |
| TrpR | 360-377 | 9.869 |
| TyrR | 310-331 | 9.852 |
| AraC | 96-113 | 9.554 |
| FruR | 313-330 | 9.138 |
| GntR | 250-269 | 9.035 |
| NarL | 382-388 | 8.993 |
| NarP | 52-58 | 8.227 |
| DnaA | 375-383 | 7.836 |
| MetJ | 358-365 | 7.710 |
| GlpR | 204-223 | 7.694 |
| TorR | 117-126 | 7.643 |
| UxuR | 105-122 | 7.607 |
| PurR | 108-123 | 7.148 |
| LacI | 252-272 | 7.009 |
| NorR | 313-329 | 6.918 |
| LexA | 161-180 | 6.739 |
| IdnR | 287-302 | 6.645 |
| NtrC | 342-358 | 6.300 |
| MalT | 61-70 | 6.273 |
| GalR | 324-339 | 6.045 |
| GalS | 324-339 | 6.045 |
| FadR | 89-105 | 5.644 |