| TF name | Position | PWM scan score |
| ArcA | 306-366 | 28.517 |
| CysB | 218-259 | 22.487 |
| XylR | 82-99 | 20.315 |
| CytR | 137-176 | 18.420 |
| FNR | 313-334 | 17.456 |
| OmpR | 329-348 | 17.081 |
| DcuR | 299-353 | 16.792 |
| PhoP | 70-86 | 15.927 |
| OxyR | 339-383 | 15.905 |
| SoxS | 366-383 | 14.906 |
| GadE | 239-258 | 14.671 |
| UlaR | 151-170 | 14.571 |
| IHF | 336-348 | 14.506 |
| Rob | 327-347 | 14.004 |
| NorR | 193-209 | 13.703 |
| CRP | 361-382 | 13.681 |
| H-NS | 331-345 | 13.451 |
| PhoB | 148-167 | 13.211 |
| MetR | 146-169 | 12.405 |
| Fis | 140-160 | 12.350 |
| GcvA | 326-354 | 12.310 |
| NagC | 126-148 | 12.193 |
| GntR | 36-55 | 12.156 |
| AraC | 192-209 | 11.923 |
| TorR | 291-300 | 11.736 |
| RcsB | 316-329 | 11.725 |
| FruR | 370-387 | 11.700 |
| AgaR | 328-351 | 11.627 |
| ArgP | 91-103 | 11.545 |
| Lrp | 157-168 | 11.383 |
| Nac | 379-393 | 11.062 |
| GlpR | 119-138 | 10.507 |
| ModE | 145-171 | 10.315 |
| Mlc | 230-252 | 10.290 |
| DnaA | 190-198 | 9.984 |
| TrpR | 169-186 | 9.379 |
| MelR | 310-327 | 9.349 |
| PspF | 148-164 | 9.265 |
| CpxR | 370-384 | 9.214 |
| NarL | 332-338 | 9.197 |
| UxuR | 93-110 | 9.044 |
| MarA | 177-197 | 8.997 |
| Ada | 212-239 | 8.890 |
| ArgR | 228-243 | 8.729 |
| TyrR | 232-253 | 8.721 |
| NarP | 45-51 | 8.496 |
| DeoR | 6-21 | 8.251 |
| MetJ | 60-67 | 7.917 |
| Fur | 252-266 | 7.596 |
| PurR | 209-224 | 7.430 |
| FadR | 368-384 | 7.217 |
| IdnR | 37-52 | 6.823 |
| LacI | 229-249 | 6.284 |
| MalT | 13-22 | 5.465 |