| TF name | Position | PWM scan score |
| ArcA | 53-113 | 34.138 |
| CysB | 66-107 | 24.552 |
| OmpR | 65-84 | 19.390 |
| CytR | 99-138 | 16.563 |
| Mlc | 139-161 | 16.517 |
| PhoB | 66-85 | 16.464 |
| AgaR | 306-329 | 16.443 |
| OxyR | 70-114 | 16.224 |
| NagC | 143-165 | 15.151 |
| H-NS | 224-238 | 14.820 |
| GadE | 74-93 | 14.541 |
| ArgP | 157-169 | 14.298 |
| Fis | 62-82 | 14.087 |
| PhoP | 230-246 | 13.982 |
| DcuR | 136-190 | 13.733 |
| CRP | 140-161 | 13.614 |
| TyrR | 70-91 | 13.478 |
| Lrp | 178-189 | 13.419 |
| IdnR | 6-21 | 12.900 |
| Rob | 319-339 | 12.863 |
| FNR | 143-164 | 12.606 |
| IHF | 83-95 | 12.471 |
| LexA | 176-195 | 12.388 |
| DeoR | 152-167 | 12.384 |
| GalS | 9-24 | 12.332 |
| GalR | 9-24 | 12.332 |
| GntR | 210-229 | 12.327 |
| Fur | 81-95 | 12.322 |
| SoxS | 64-81 | 12.090 |
| MarA | 76-96 | 11.734 |
| Ada | 301-328 | 11.717 |
| PspF | 91-107 | 11.219 |
| NorR | 318-334 | 11.192 |
| RcsB | 63-76 | 11.067 |
| ArgR | 72-87 | 11.011 |
| UlaR | 125-144 | 10.967 |
| ModE | 212-238 | 10.735 |
| Nac | 93-107 | 10.666 |
| XylR | 208-225 | 10.595 |
| GcvA | 220-248 | 10.441 |
| MetJ | 130-137 | 10.148 |
| CaiF | 52-96 | 10.101 |
| NarL | 108-114 | 9.729 |
| CpxR | 73-87 | 9.714 |
| TorR | 239-248 | 9.592 |
| MelR | 63-80 | 9.559 |
| GlpR | 148-167 | 8.998 |
| FhlA | 44-83 | 8.649 |
| UxuR | 226-243 | 8.487 |
| MetR | 74-97 | 8.253 |
| AraC | 266-283 | 8.046 |
| PurR | 9-24 | 7.707 |
| RhaS | 17-33 | 7.387 |
| FadR | 221-237 | 6.327 |
| FruR | 223-240 | 6.184 |
| DnaA | 200-208 | 6.023 |
| NarP | 113-119 | 5.835 |
| LacI | 157-177 | 5.485 |