| TF name | Position | PWM scan score |
| ArcA | 276-336 | 32.932 |
| CysB | 289-330 | 27.384 |
| AgaR | 281-304 | 19.170 |
| OxyR | 278-322 | 19.055 |
| OmpR | 290-309 | 17.642 |
| PhoP | 308-324 | 16.464 |
| FruR | 371-388 | 15.317 |
| IdnR | 321-336 | 15.049 |
| NagC | 292-314 | 14.767 |
| Rob | 313-333 | 14.718 |
| UlaR | 273-292 | 14.577 |
| NorR | 153-169 | 14.422 |
| ModE | 292-318 | 14.394 |
| CytR | 274-313 | 14.305 |
| DcuR | 275-329 | 13.898 |
| PhoB | 293-312 | 13.528 |
| FNR | 293-314 | 13.514 |
| IHF | 61-73 | 13.471 |
| ArgP | 308-320 | 13.415 |
| Nac | 291-305 | 13.230 |
| GadE | 290-309 | 13.142 |
| Lrp | 285-296 | 12.016 |
| MetJ | 217-224 | 11.820 |
| CRP | 145-166 | 11.724 |
| PurR | 323-338 | 11.511 |
| H-NS | 303-317 | 11.444 |
| RcsB | 304-317 | 11.412 |
| RhaS | 124-140 | 11.000 |
| MarA | 276-296 | 10.866 |
| SoxS | 263-280 | 10.720 |
| GntR | 290-309 | 10.668 |
| FadR | 149-165 | 10.532 |
| Fis | 289-309 | 10.485 |
| ArgR | 250-265 | 10.402 |
| Mlc | 328-350 | 10.076 |
| UxuR | 6-23 | 9.484 |
| MelR | 205-222 | 9.461 |
| PspF | 233-249 | 8.986 |
| GcvA | 300-328 | 8.854 |
| DeoR | 105-120 | 8.793 |
| TyrR | 297-318 | 8.660 |
| AraC | 277-294 | 8.612 |
| DnaA | 8-16 | 8.492 |
| MetR | 293-316 | 8.377 |
| MalT | 17-26 | 8.308 |
| CpxR | 137-151 | 8.059 |
| NarL | 294-300 | 7.884 |
| Fur | 282-296 | 7.788 |
| TorR | 306-315 | 7.771 |
| GlpR | 311-330 | 7.254 |
| XylR | 288-305 | 6.823 |
| LacI | 252-272 | 6.049 |
| TrpR | 325-342 | 6.048 |
| NarP | 227-233 | 5.744 |
| FhlA | 99-138 | 5.598 |
| Ada | 327-354 | 5.378 |
| GalR | 331-346 | 5.162 |
| GalS | 331-346 | 5.162 |